Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p11
         (199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   0.26 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   3.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    19   5.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    18   9.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 183 LVDESAFGSNVINYCEQ-FITAIFEIF 106
           +VD S  G+ ++NY    F++A+F  F
Sbjct: 559 IVDSSTSGATIVNYSIMIFLSAVFISF 585


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 131 LSRPFSKFLRSAVKSLWPCPSIG 63
           +SRP  K  R A KS  P P  G
Sbjct: 346 MSRPSDKEEREAQKSQKPSPVTG 368


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 105 TLSSKIVVAVPVNWEND 55
           TL+SK  +  PV W ND
Sbjct: 463 TLNSKDPLDPPVIWSND 479


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 70  DGHGHNDFTAERKNFENG 123
           DGH  ND    R+   NG
Sbjct: 68  DGHPVNDVPGVRRVLRNG 85


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 70  DGHGHNDFTAERKNFENG 123
           DGH  ND    R+   NG
Sbjct: 68  DGHPVNDVPGVRRVLRNG 85


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 69  NWENDNLSVLLKHLHNLNLME 7
           N+ N+N +   K  +N+N +E
Sbjct: 95  NYNNNNYNNYKKLYYNINYIE 115


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 69  NWENDNLSVLLKHLHNLNLME 7
           N+ N+N +   K  +N+N +E
Sbjct: 105 NYNNNNYNNYKKLYYNINYIE 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 65   QLTGTATTILLLSVKI 112
            Q+T TATT   L++K+
Sbjct: 1371 QITLTATTTNSLTMKV 1386


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 147 NYCEQFITAIFEIFTLSSKIVVAV 76
           ++C     A F +F L  +I VAV
Sbjct: 77  SHCMTITFASFLLFILLVQIAVAV 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,366
Number of Sequences: 438
Number of extensions: 792
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)