Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p10
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   5.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   5.8  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   5.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   7.7  

>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 270 DDQFGMSNFNWKVGSSNYQILRTGCFPY-IKYHCSRKRAEDLNMSDKFMRIIK 115
           DD   ++N         YQ+L   C  + I++ C+   A D      FMR+++
Sbjct: 96  DDVHSLTNLETIAREHRYQVLTRACITHNIRHICTAHHAND-QAETIFMRLLR 147


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 222 NYQILRTGCFPYIKYHCSRKRAEDLNMSDKFMRIIKVANLG 100
           N QI +  C P +K HCS    + +  + K  R  ++  +G
Sbjct: 141 NTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTPVG 181


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 428  HDLQEIIS--S*NYFKVRNVCFIFRPICN 508
            H L+ II+    N   +RNVC +F P  N
Sbjct: 1201 HHLRRIIAFEKVNKMNIRNVCIVFSPTLN 1229


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 397 WKCMATLIARFSNKPTSSEVLTAYLTQC 314
           WK +  +  RF  K T  E+LTA   QC
Sbjct: 84  WKQVIEVDRRFRTKATEFELLTATAFQC 111


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 464 NNFS*KLFLVNHVCGISSYTPGMEMYGYSD 375
           N+ S K+++V   CG+ +  PG+E+Y  S+
Sbjct: 25  NSISDKIYVV---CGLDNENPGIEIYEISE 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,126
Number of Sequences: 5004
Number of extensions: 62478
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)