Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p10
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  RPYSKQGIPKLATFIILI 130
           RP SKQG+P L  F I +
Sbjct: 2   RPPSKQGLPVLVDFNIFV 19


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 207 RTGCFPYIKYHCSRKRAEDLNMSDKFMRIIK 115
           +TG  PY+++ C   R     ++D + +I K
Sbjct: 266 QTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK 296


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 598 VVTELHTNPKS*LNIKTTFQSLICRTLH*FITYWSENKTNISN 470
           ++ EL  NP+   NIK T   +  +    F+  +  + T +SN
Sbjct: 273 MLMELQKNPQKLENIKLTDSLIAAQAFVFFLAGFETSSTTMSN 315


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 84  YGLAATQLIRHEEIVHTSKGPVP 16
           Y  AA+  + HE +V T+  P P
Sbjct: 491 YDGAASTAVIHEPVVETNSSPSP 513


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 96 PCLLYGLAATQLIRHEEIVHTSKGPVPI 13
          PC     + T+L RH + VHT     PI
Sbjct: 7  PCNKILTSLTRLRRHIQNVHTRPSKEPI 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,665
Number of Sequences: 438
Number of extensions: 4448
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)