Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14p09
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 171 3e-43
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 28 3.1
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 3.1
11_01_0645 + 5185341-5185568,5185773-5185823 27 5.5
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 27 5.5
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 7.3
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 7.3
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 27 9.6
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339 27 9.6
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647... 27 9.6
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 9.6
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 171 bits (415), Expect = 3e-43
Identities = 74/134 (55%), Positives = 103/134 (76%)
Frame = -2
Query: 441 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 262
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 261 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 82
Y+R +GV KI+GGR+RNG P HFC+SSG+I+R LQ L+ + +++ GGR++T
Sbjct: 68 YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127
Query: 81 TQGRRDLDRIAAQV 40
+QGRRDLD++A +V
Sbjct: 128 SQGRRDLDQVAGRV 141
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -2
Query: 186 SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQ 22
SH C S S+ R+ LQS+ EA +L + ++ R Q + DLD +A ++ L +
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDLNLRD 252
Query: 21 QA 16
A
Sbjct: 253 CA 254
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 334 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 456
S +YK+ +LRYLD + S S SFN+L+ L T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 264 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 148
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 423 QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 259
+D+I+ + ++ V+VP + +LV TA L P D W +R A LR +
Sbjct: 947 EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = -2
Query: 456 KMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWF 295
++ ++ V D +++ + + H K TG ++ E+ ++ L PY D F
Sbjct: 224 EVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 96 HRPELSQQASMPPTIAKPCVQYCLMTCRN 182
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 191 HLHISAGHQAVLHARLCNRW 132
H HI+AG +L +R+ N W
Sbjct: 161 HRHITAGSGTILQSRVANAW 180
>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
Length = 697
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -2
Query: 237 KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLV--EKVQDGGRILTTQGRRD 64
+T +F +RNG +HF SS A + +LE K V ++ G R+ G
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307
Query: 63 LDRIA 49
LD A
Sbjct: 308 LDMYA 312
>06_03_0203 -
17863130-17863940,17864023-17864341,17864653-17864716,
17864811-17864929,17865515-17865640,17866626-17866632,
17867421-17867562,17867720-17867738,17868082-17868292
Length = 605
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 102 PELSQQASMPPTIAKPCVQYCLMTCRNVK 188
P+L ++ + T P V++C MTCR ++
Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -2
Query: 153 RKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAA 46
R AL++L+ + L ++++ DGG +L T+G ++++A
Sbjct: 110 RTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSA 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,517,288
Number of Sequences: 37544
Number of extensions: 246732
Number of successful extensions: 689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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