Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14p08
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 30 0.41
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom... 29 0.95
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.7
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 2.9
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 3.8
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 26 5.0
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 6.7
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 8.8
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 25 8.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.8
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 614 SSLFKNSESSQNGISIPLLMYCCGCNICI-FSPRSINNSSRVVRLSRC 754
S +++SE S+N S L+Y C +C+ F +N V L+ C
Sbjct: 570 SDQYEDSEDSRNFPSKLYLVYLSNCPLCLKFKLSKVNQQKATVHLATC 617
>SPAC12B10.15c |||ribonuclease H2 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.95
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 296 CHIWFDTPAPFFSRYHTQTQ 237
CHI +D PAP F +H + Q
Sbjct: 26 CHISYDGPAPVFEYFHDKIQ 45
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 200 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 114
++QK +P DK P N L+L A TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 502 LNVE-LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 633
LNV L +GH FHG V GRI++ T Y E+ V ++
Sbjct: 268 LNVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 633 EFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFN--IEDYNNIFKVME 472
EFLN + +P+SRM N + +E + CK N ED++ I + E
Sbjct: 87 EFLNGFVSRFPNHPISRM--NKIQSKMLEMLEEWNYMLCKNNRHREDFSRIHDIRE 140
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 633 EFLNRLLKHIDPYPLSRMYYNAANTM 556
E N L ID PLSR Y+NA T+
Sbjct: 1208 ELENNLALAIDRLPLSRNYFNAGLTL 1233
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 504 EDYNNIFKVMENIRKHSNKNLNDQD 430
ED N+ K ++RKH +N D+D
Sbjct: 86 EDLYNLIKKAVSVRKHLERNRKDKD 110
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 348 LCSCSFYLINIFYALHSTIELPNICLTRLGRLNFCCCVS*YFPS 479
L +CS I++ Y L+ LP I + LNF ++ YF S
Sbjct: 120 LSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFAS 163
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 200 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 72
H QK + P P++QNT H THP + SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 54 TVESQTRAGDEIASFLRYC 110
T+E +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +2
Query: 614 SSLFKNSESS----QNGISI-PLLMYCCGCNICIFSPRSINN 724
SS F+ ES+ Q I++ PLL+ C CN FS RS+ +
Sbjct: 1230 SSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKS 1271
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 549 TTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNK 448
+++E ++ K IED N K +E IRK S +
Sbjct: 67 SSLEENKLTKLKAPIEDMENTKKELEEIRKQSTE 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,019
Number of Sequences: 5004
Number of extensions: 61693
Number of successful extensions: 216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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