Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14p03
(816 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB076359-1|BAD01546.1| 298|Homo sapiens keratin associated prot... 35 0.31
AL445189-2|CAH71699.1| 703|Homo sapiens RP11-787I22.1 protein. 32 2.9
AL390208-1|CAI16717.2| 867|Homo sapiens armadillo repeat contai... 32 2.9
AJ406936-1|CAC27575.1| 166|Homo sapiens keratin associated prot... 32 2.9
AJ406937-1|CAC27576.1| 186|Homo sapiens keratin associated prot... 31 5.0
AJ296168-1|CAC27563.1| 106|Homo sapiens keratin associated prot... 31 5.0
AB076350-1|BAD01537.1| 221|Homo sapiens keratin associated prot... 31 5.0
BC040196-1|AAH40196.1| 408|Homo sapiens CLIC6 protein protein. 30 8.7
AK092733-1|BAC03959.1| 175|Homo sapiens protein ( Homo sapiens ... 30 8.7
AJ406945-1|CAC27584.1| 193|Homo sapiens keratin associated prot... 30 8.7
AF448439-1|AAN76730.1| 704|Homo sapiens chloride channel form B... 30 8.7
AF448438-1|AAN76729.1| 686|Homo sapiens chloride channel form A... 30 8.7
AF426169-1|AAL24813.1| 138|Homo sapiens chloride intracellular ... 30 8.7
>AB076359-1|BAD01546.1| 298|Homo sapiens keratin associated protein
protein.
Length = 298
Score = 35.1 bits (77), Expect = 0.31
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +1
Query: 430 CTCPLYNSA*YTRRRNRICNPISCSRNW**YL*TCTFSICLYRP-AQVSIRSVKFLKFCL 606
C P+ + A Y+R + C P +C CT S C RP + VS+ +
Sbjct: 203 CCVPVCSRASYSRCQQPSCQP-AC----------CTTSCC--RPSSSVSLLCHPVCR-ST 248
Query: 607 YCCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARI-LSCWSLC 744
C + +CC P T+ Q C P + V L C A L+C+SLC
Sbjct: 249 CCVPVSSCCAP----TSSCQSSCCCPASCVSLLCRPASSRLACYSLC 291
>AL445189-2|CAH71699.1| 703|Homo sapiens RP11-787I22.1 protein.
Length = 703
Score = 31.9 bits (69), Expect = 2.9
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = -2
Query: 407 KRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTK 228
K + N D++ + + +L+++R D N + Y + S+ FL+EM++K
Sbjct: 193 KISRNEKNDSLIQNDSILESLLEVLRSEDLQTNMEAFLYCMGSIKFISGNLGFLNEMISK 252
Query: 227 KLIESNAMVFDETNKNLK 174
+E + + N+N+K
Sbjct: 253 GAVEILINLIKQINENIK 270
>AL390208-1|CAI16717.2| 867|Homo sapiens armadillo repeat
containing 2 protein.
Length = 867
Score = 31.9 bits (69), Expect = 2.9
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = -2
Query: 407 KRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTK 228
K + N D++ + + +L+++R D N + Y + S+ FL+EM++K
Sbjct: 358 KISRNEKNDSLIQNDSILESLLEVLRSEDLQTNMEAFLYCMGSIKFISGNLGFLNEMISK 417
Query: 227 KLIESNAMVFDETNKNLK 174
+E + + N+N+K
Sbjct: 418 GAVEILINLIKQINENIK 435
>AJ406936-1|CAC27575.1| 166|Homo sapiens keratin associated protein
4.4 protein.
Length = 166
Score = 31.9 bits (69), Expect = 2.9
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 610 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*R 750
CCQ CC V + R +CC +TT C T T R C S C R
Sbjct: 115 CCQPTCCCPSYCVSSCCRPQCC---QTTCCRT-TCCRPSCCVSRCYR 157
>AJ406937-1|CAC27576.1| 186|Homo sapiens keratin associated protein
4.5 protein.
Length = 186
Score = 31.1 bits (67), Expect = 5.0
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Frame = +1
Query: 427 NCTCPLYNSA*YTRRRNRICNPISCSRNW**YL*TCTFSICLYRPAQVSIRSVKFLKFCL 606
NC CP + T R C P C C S+C Y+P C
Sbjct: 19 NCCCP--SCCQTTCCRTTCCRPSCCKPQ-------CCQSVC-YQPT-----------CCH 57
Query: 607 YCCQIRACCVPATV*TARRQKCCAKP---RTTVCLTCTLARILSCWSLC 744
C I +CC P ++ + CC +P +TT C T C S C
Sbjct: 58 PSCCISSCCRPYCCESSCCRPCCCRPSCCQTTCCRTTCCRTTCCCPSCC 106
>AJ296168-1|CAC27563.1| 106|Homo sapiens keratin associated protein
protein.
Length = 106
Score = 31.1 bits (67), Expect = 5.0
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 610 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*R 750
CCQ CC V + R +CC +TT C T T R C S C R
Sbjct: 55 CCQPTCCCPSYCVSSCCRPQCC---QTTRCRT-TCCRPSCCVSRCYR 97
>AB076350-1|BAD01537.1| 221|Homo sapiens keratin associated protein
protein.
Length = 221
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 532 CTFSICLYRPAQVSIRSVKFLKFCLYCCQIRACCVPATV*TARRQKCCAKPRTTVCLTC- 708
CT S C RP+ + + YC I +CC PA+ Q C +P + V L C
Sbjct: 147 CTTSCC--RPSSSVSLLCRPVCRSTYCVPIPSCCAPAST----CQPSCCRPASCVSLLCR 200
Query: 709 -TLARILS 729
T +R+ S
Sbjct: 201 PTCSRLSS 208
>BC040196-1|AAH40196.1| 408|Homo sapiens CLIC6 protein protein.
Length = 408
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 356 QNDVLDMMREVDQYLNSDTPD----YTIESLNAPGKQFDFLDEM 237
+ ++L +R++D YLNS PD Y+ E + G++F DE+
Sbjct: 297 EKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDEL 340
>AK092733-1|BAC03959.1| 175|Homo sapiens protein ( Homo sapiens
cDNA FLJ35414 fis, clone SMINT2000609, highly similar to
Oryctolagus cuniculus mRNA for parchorin. ).
Length = 175
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 356 QNDVLDMMREVDQYLNSDTPD----YTIESLNAPGKQFDFLDEM 237
+ ++L +R++D YLNS PD Y+ E + G++F DE+
Sbjct: 64 EKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDEL 107
>AJ406945-1|CAC27584.1| 193|Homo sapiens keratin associated protein
4.15 protein.
Length = 193
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 610 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*R 750
CCQ CC P T R CC T C T R C S C R
Sbjct: 38 CCQ-SVCCQP----TCCRPSCCPSCCQTTCCRTTCCRPSCCVSSCCR 79
>AF448439-1|AAN76730.1| 704|Homo sapiens chloride channel form B
protein.
Length = 704
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 356 QNDVLDMMREVDQYLNSDTPD----YTIESLNAPGKQFDFLDEM 237
+ ++L +R++D YLNS PD Y+ E + G++F DE+
Sbjct: 593 EKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDEL 636
>AF448438-1|AAN76729.1| 686|Homo sapiens chloride channel form A
protein.
Length = 686
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 356 QNDVLDMMREVDQYLNSDTPD----YTIESLNAPGKQFDFLDEM 237
+ ++L +R++D YLNS PD Y+ E + G++F DE+
Sbjct: 575 EKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDEL 618
>AF426169-1|AAL24813.1| 138|Homo sapiens chloride intracellular
channel 6 protein.
Length = 138
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 356 QNDVLDMMREVDQYLNSDTPD----YTIESLNAPGKQFDFLDEM 237
+ ++L +R++D YLNS PD Y+ E + G++F DE+
Sbjct: 27 EKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDEL 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,816,705
Number of Sequences: 237096
Number of extensions: 1996360
Number of successful extensions: 4993
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4962
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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