Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14p03
(816 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY059435-1|AAL13341.1| 609|Drosophila melanogaster GH02003p pro... 34 0.20
AE014296-2294|AAF49806.1| 516|Drosophila melanogaster CG32130-P... 34 0.20
AE014296-2293|AAF49808.1| 516|Drosophila melanogaster CG32130-P... 34 0.20
AE014296-2292|AAF49807.1| 542|Drosophila melanogaster CG32130-P... 34 0.20
AE014296-2291|AAF49809.2| 609|Drosophila melanogaster CG32130-P... 34 0.20
BT024439-1|ABC86501.1| 385|Drosophila melanogaster IP01996p pro... 31 2.5
AE014298-1308|AAF46468.3| 385|Drosophila melanogaster CG15371-P... 31 2.5
AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-P... 29 7.6
>AY059435-1|AAL13341.1| 609|Drosophila melanogaster GH02003p
protein.
Length = 609
Score = 34.3 bits (75), Expect = 0.20
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -2
Query: 389 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESN 210
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++ +
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLKLD 485
Query: 209 AMVFDETNK-NLKFIHNSISICLNRCINLITIK 114
+ D K +++ C+ IN++ K
Sbjct: 486 TI--DTNGKDSIRLARKEAIKCIQASINVLEAK 516
>AE014296-2294|AAF49806.1| 516|Drosophila melanogaster CG32130-PD,
isoform D protein.
Length = 516
Score = 34.3 bits (75), Expect = 0.20
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -2
Query: 389 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESN 210
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++ +
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLKLD 392
Query: 209 AMVFDETNK-NLKFIHNSISICLNRCINLITIK 114
+ D K +++ C+ IN++ K
Sbjct: 393 TI--DTNGKDSIRLARKEAIKCIQASINVLEAK 423
>AE014296-2293|AAF49808.1| 516|Drosophila melanogaster CG32130-PB,
isoform B protein.
Length = 516
Score = 34.3 bits (75), Expect = 0.20
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -2
Query: 389 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESN 210
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++ +
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLKLD 392
Query: 209 AMVFDETNK-NLKFIHNSISICLNRCINLITIK 114
+ D K +++ C+ IN++ K
Sbjct: 393 TI--DTNGKDSIRLARKEAIKCIQASINVLEAK 423
>AE014296-2292|AAF49807.1| 542|Drosophila melanogaster CG32130-PC,
isoform C protein.
Length = 542
Score = 34.3 bits (75), Expect = 0.20
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -2
Query: 389 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESN 210
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++ +
Sbjct: 370 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLKLD 418
Query: 209 AMVFDETNK-NLKFIHNSISICLNRCINLITIK 114
+ D K +++ C+ IN++ K
Sbjct: 419 TI--DTNGKDSIRLARKEAIKCIQASINVLEAK 449
>AE014296-2291|AAF49809.2| 609|Drosophila melanogaster CG32130-PA,
isoform A protein.
Length = 609
Score = 34.3 bits (75), Expect = 0.20
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -2
Query: 389 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESN 210
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++ +
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLKLD 485
Query: 209 AMVFDETNK-NLKFIHNSISICLNRCINLITIK 114
+ D K +++ C+ IN++ K
Sbjct: 486 TI--DTNGKDSIRLARKEAIKCIQASINVLEAK 516
>BT024439-1|ABC86501.1| 385|Drosophila melanogaster IP01996p
protein.
Length = 385
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -2
Query: 266 GKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHNSISICLNRCINLITIKHYVQ*YGFL 87
G+ F + L ++L++ ++ LK + + + + I I+ V Y F+
Sbjct: 212 GRSFPGFESFLRRRLVQKQR-IYSHVYDMLKCFQGAFNFSILAVLLTINIRIAVDCY-FM 269
Query: 86 FYNIYVYEISNCYY 45
+Y+IY I+N YY
Sbjct: 270 YYSIYNNVINNDYY 283
>AE014298-1308|AAF46468.3| 385|Drosophila melanogaster CG15371-PA
protein.
Length = 385
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -2
Query: 266 GKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHNSISICLNRCINLITIKHYVQ*YGFL 87
G+ F + L ++L++ ++ LK + + + + I I+ V Y F+
Sbjct: 212 GRSFPGFESFLRRRLVQKQR-IYSHVYDMLKCFQGAFNFSILAVLLTINIRIAVDCY-FM 269
Query: 86 FYNIYVYEISNCYY 45
+Y+IY I+N YY
Sbjct: 270 YYSIYNNVINNDYY 283
>AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-PA
protein.
Length = 1284
Score = 29.1 bits (62), Expect = 7.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 411 SKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHRILKRAG 265
S +KH+H R S R G RSG ++H R H AG
Sbjct: 533 STRKHKHRHRRTSDNESELSRGSGRSGRSGRSHHRKHRRSHRHRRDSAG 581
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,952,032
Number of Sequences: 53049
Number of extensions: 689768
Number of successful extensions: 2045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2045
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -