Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o24
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     28   9.8  
05_02_0124 + 6849034-6851502                                           28   9.8  

>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 573 GSGLALPLALLKSMGDGNYSPSGGPYARL 659
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


>05_02_0124 + 6849034-6851502
          Length = 822

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 141 RKVFNGSIRKWILFKSCIPDKYVVDKCFGHVCNIWID 31
           RKVF+G I K ++  + +  +YV  +C      I++D
Sbjct: 208 RKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLD 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,350,931
Number of Sequences: 37544
Number of extensions: 446821
Number of successful extensions: 981
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)