Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o24
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical pr...    32   0.54 
Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    28   6.7  

>Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical
           protein F22G12.6 protein.
          Length = 276

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 624 YRRPWTSAMPGAEPSRCLPLNT--LHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKDLWK 451
           Y    +S+ P + PSR L L +  L KPR        +GN+++    H  ++  + D WK
Sbjct: 33  YELECSSSTPDSFPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK 92


>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical protein
            F57F5.2 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -1

Query: 636  MVSSYRRPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKD 460
            M S   R   SA P     R L    L K + +  M+   G++V  SS HS  +R KKD
Sbjct: 865  MSSLDERTTVSAKP-TTTRRLLNQKDLEKEKKRSSMA---GSSVTSSSAHSHSIRSKKD 919


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical protein
            F57F5.2 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -1

Query: 636  MVSSYRRPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKD 460
            M S   R   SA P     R L    L K + +  M+   G++V  SS HS  +R KKD
Sbjct: 865  MSSLDERTTVSAKP-TTTRRLLNQKDLEKEKKRSSMA---GSSVTSSSAHSHSIRSKKD 919


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 393 IDRVVPSRDTWSHCGHPQCVSRDLFCH 473
           ID VV     WS C HP CV+  +F H
Sbjct: 6   IDNVV----NWSRCVHPSCVAWVIFIH 28


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 438 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMT 530
           HPQ V++ +  HVP G    +PP+  P+  T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
            cyclase GCY-33 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -1

Query: 636  MVSSYRRPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKD 460
            M S   R   SA P     R L    L K + +  M+   G++V  SS HS  +R KKD
Sbjct: 865  MSSLDERTTVSAKP-TTTRRLLNQKDLEKEKKRSSMA---GSSVTSSSAHSHSIRSKKD 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,466,994
Number of Sequences: 27780
Number of extensions: 375126
Number of successful extensions: 854
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)