Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o22
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 31 0.66
AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical... 31 1.2
AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain (... 30 1.5
Z81059-5|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical p... 29 3.5
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 28 6.2
U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -3
Query: 720 DEQRQPNKFSTKXINFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLP 541
D + P+K + K + L+ N+ T ++ +L+ D + +NT L E S+
Sbjct: 10 DLSKLPDKATFKKLGDLKSLNLGTIATIDVDSIIKSLDDGSDKSVAAVNTTLEEFAKSIA 69
Query: 540 DLTLMLDKLAEQLLEAINTMQ 478
+T LDK + +E + T++
Sbjct: 70 TVTSALDKTSS--METLETLK 88
>AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical
protein F16B4.1 protein.
Length = 421
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 112 YRCRANAAHHSRCFFFAEPRGECRFSR 32
+ CRA AA RC F E R CR S+
Sbjct: 49 FSCRACAAFFRRCHFLKENRRRCRLSK 75
>AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 30 protein.
Length = 238
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -1
Query: 281 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHD-VTRARRNKTPKKSLKSCSSTR 117
LW+T++K+++ +R ++ K + + A+++KRR V A + K ++ K+ +R
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKRKLAEEFAKNYEESR 200
>Z81059-5|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical
protein F11F1.8 protein.
Length = 176
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = -3
Query: 654 MTGVRNQNVQ-LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDK---LAEQLLEAIN 487
+ G N ++ L++ + + +L + +L + D L DL+ ++D + + ++AIN
Sbjct: 81 LLGSANDELKNLISTVFKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAIN 140
Query: 486 TMQQTQRNELNNTNSILTNL 427
++ T + ELN I+T L
Sbjct: 141 QLRGTNKIELNTIIFIITQL 160
>Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical
protein F11F1.5 protein.
Length = 246
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -3
Query: 669 ELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLE-- 496
+L+ ++ G+ ++ L++ + T +L + +L + D L L+ ++D +E
Sbjct: 147 KLNGLVPGLGDELNNLISTIFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKN 206
Query: 495 -AINTMQQTQRNELNNTNSILTNL 427
AIN ++ T + ELN I+T L
Sbjct: 207 NAINQLKGTNKIELNTIIFIITQL 230
>U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical
protein K12D9.12 protein.
Length = 831
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 419 LDAKLVKIELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITS 598
LDAKL + L + + C+ + NNC + N+ ++ G+E +++ V + S
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVLEFL-FGS 721
Query: 599 LAVSN 613
L + N
Sbjct: 722 LIIQN 726
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
protein T16G12.5 protein.
Length = 1142
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 223 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 318
TCLF C YI DI+ ++ V LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = -3
Query: 744 IXSSKRHVDEQRQPNKFSTKXINFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLL 565
I S K V +R K S + ELSN++ ++ QLL LE ++ + L
Sbjct: 250 IDSLKSDVTNKRDTAKSSQQREQ--ELSNILEEKEKESAQLLQQLEESRAALRDEQRHLE 307
Query: 564 SEITDS--LPDLTLMLDKLAEQLLEAINTMQQTQRNEL 457
+ ++ + + + +L E+L + +Q NEL
Sbjct: 308 HQEAENGKIVEQLKTVSELNEKLTMQVKDLQDASENEL 345
>U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical
protein T07E3.2 protein.
Length = 89
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 200 KRRPCHDVTRARRNKTPKKSLKSCSSTRKLSLPSKRCAP 84
K++ D+ R+NKTP S S S K+ +P+ AP
Sbjct: 26 KKKKNKDLISTRKNKTPIGSPASTSEHEKIVIPTPPPAP 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,985
Number of Sequences: 27780
Number of extensions: 284511
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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