Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o17
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0592 + 4702327-4702416,4702510-4702568,4703900-4703994,470...   107   6e-24
12_01_0511 + 4049760-4049967,4050096-4050166,4051306-4051364,405...    60   9e-10
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    31   0.35 
04_04_1594 + 34675012-34675101,34675228-34675433,34675950-34676121     27   9.8  

>11_01_0592 +
           4702327-4702416,4702510-4702568,4703900-4703994,
           4704348-4704352
          Length = 82

 Score =  107 bits (256), Expect = 6e-24
 Identities = 55/81 (67%), Positives = 58/81 (71%), Gaps = 18/81 (22%)
 Frame = -1

Query: 228 MIIPVRCFTCGKV------------------IGNKWEAYLGLLQADYTEGDALDVLGLKR 103
           MIIPVRCFTCGKV                  IGNKW+ YL LLQADYTEGDALD LGL R
Sbjct: 1   MIIPVRCFTCGKVSLVSPSHASRLGDGRVLVIGNKWDLYLDLLQADYTEGDALDALGLVR 60

Query: 102 YCCRRMLLGHVDLIEKLLNYS 40
           YCCRRML+ HVDLIEKLLNY+
Sbjct: 61  YCCRRMLMTHVDLIEKLLNYN 81


>12_01_0511 +
           4049760-4049967,4050096-4050166,4051306-4051364,
           4052424-4052549,4052943-4053037,4053263-4053312
          Length = 202

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = -1

Query: 132 DALDVLGLKRYCCRRMLLGHVDLIEKLLNYS 40
           DALD LGL RYCCRRML+ HVDLIEKLLNY+
Sbjct: 156 DALDALGLVRYCCRRMLMTHVDLIEKLLNYN 186



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = -1

Query: 195 KVIGNKWEAYLGLLQADYTEGDALDVLGLKRY 100
           KVIGNKW+ YL LLQADYTEG +    G +RY
Sbjct: 93  KVIGNKWDLYLDLLQADYTEGGSGRQRGEERY 124


>03_02_0222 +
           6540095-6540099,6541215-6541339,6541440-6541766,
           6541815-6543215,6543268-6543357,6543800-6544515,
           6545549-6545707,6545877-6546186,6546794-6546861,
           6547354-6547896
          Length = 1247

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = -1

Query: 174 EAYLGLLQADYTEGDALDVLGLKRYCCRR-MLLGHV-DLIEKLLN 46
           +AY+GLL A +  GD   VL ++ YC RR  LLG + DL +++++
Sbjct: 841 DAYIGLLTAKFERGDEHGVL-IQEYCDRRDELLGSLYDLAKQIVD 884


>04_04_1594 + 34675012-34675101,34675228-34675433,34675950-34676121
          Length = 155

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 228 MIIPVRCFTCGKVIG-NKWEAYLG 160
           +++  RCF CG+ +   +W A+ G
Sbjct: 69  IMVATRCFCCGRALSPGRWRAFAG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,666,779
Number of Sequences: 37544
Number of extensions: 226811
Number of successful extensions: 423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)