Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o13
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    58   1e-09
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.1  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   2.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   3.8  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   8.7  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
 Frame = -1

Query: 691 DIEVEXGDD--YVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIFXXXXXXXXXX 518
           DIE   G    Y ++L+  Y       +YD +PE+ +G N+AD++DP+I           
Sbjct: 401 DIEAANGGAGVYNVELRDKYILQDPSWKYDRMPELLDGKNVADFVDPEIEAKLLALDEEE 460

Query: 517 XXXXAGGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKT 338
                 G Y + +   D    E+ E A +IR K  +    +R  K   +PV+PRT+  +T
Sbjct: 461 ERLEREGYYDSDQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNRPVLPRTAGIRT 520

Query: 337 KQRSTSKLR 311
                S L+
Sbjct: 521 LDELQSSLQ 529


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 400 ESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKL 293
           +S++   S KP +PRTS + +   S + LRK   +L
Sbjct: 147 QSKVTTASLKPNIPRTSMSSSPTASRTSLRKGAGEL 182


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -1

Query: 442 LARQIRNKKA----ILKDESRLVKQSTKPVMPRTSRAKT---KQRSTSKLRKDMEKLGVD 284
           L +  ++KKA    +  D S+     TK   P+ S+ KT   +Q + S   +  EKL  D
Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKST-PKKSKKKTSKAQQEANSTTAEGKEKLSGD 586

Query: 283 MSETGDA 263
            +ETG++
Sbjct: 587 STETGNS 593


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 478 IELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVM-PRTSRAKTKQRSTSKL 314
           I LDD++    +   + RN+      +  LV  S K    P+TS   TK R+ SKL
Sbjct: 139 IILDDSLHTNSKKLGKTRNEVKEESQKRELVSNSIKEATSPKTSSILTKPRNPSKL 194


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 694  GDIEVEXGDDYVLDLKK--NYTEIPEDERYDVIPEIW 590
            GD E E G   +  LKK  NY E  E+  +   P++W
Sbjct: 909  GDDEDEDGSGPIWQLKKENNYWESRENSTWSSCPKLW 945


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 475 ELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMP 359
           +LD+   E+ ELA ++ +   ++   S L  QS   ++P
Sbjct: 147 DLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILP 185


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 270 PVSDMSTPSFSMSFLSLEVDLCLVLAREVRGITGFVDCF 386
           P+   STP   +S LS ++DL    A +  G+T F D F
Sbjct: 144 PLEIYSTP---VSVLSSQIDLLRRFATDSDGLTPFTDVF 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,042
Number of Sequences: 5004
Number of extensions: 33421
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)