Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o13
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0075 - 558829-560859 73 2e-13
06_01_0668 - 4882174-4884204 72 6e-13
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 35 0.079
07_03_0161 - 14560287-14560426,14560467-14560707 34 0.10
12_02_0298 + 17041206-17041712 32 0.42
11_01_0404 + 3071412-3071464,3073572-3074970 30 1.7
01_06_0464 + 29571791-29572240 30 1.7
09_06_0354 - 22490833-22491417 30 2.2
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 30 2.2
06_03_1392 - 29842084-29842176,29842743-29842817,29842906-298429... 29 3.0
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 29 3.0
12_02_1164 + 26620779-26621087 29 3.9
09_04_0682 - 19429007-19429426 29 3.9
10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134 29 5.2
06_02_0355 + 15108541-15108589,15108928-15109301,15109947-15110198 29 5.2
12_01_0843 + 7891622-7892524 28 6.9
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 28 6.9
02_02_0183 + 7576901-7576908,7577666-7578176 28 6.9
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045... 28 9.1
>07_01_0075 - 558829-560859
Length = 676
Score = 72.9 bits (171), Expect = 2e-13
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Frame = -1
Query: 691 DIEVEXGDD--YVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIF-XXXXXXXXX 521
D+E E G Y LKK+Y ++ + D++PEI +GHN+AD++DPDI
Sbjct: 417 DLENENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDILQRCEELEREE 476
Query: 520 XXXXXAGGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQS--TKPVMPRTSR 347
A +I+ + E RE+ QIR KKA+L E R+ K++ ++P++PR
Sbjct: 477 GLRLEEEAAQEAFQIDGHELTEEQREILGQIRKKKALLIQEHRMKKRTAESRPIVPR-KF 535
Query: 346 AKTKQRSTSKLRKDMEKLGVDMSETGD 266
K + +T ++ + + +G D S D
Sbjct: 536 DKDRTFTTDRMGRQLSSMGFDPSAAMD 562
>06_01_0668 - 4882174-4884204
Length = 676
Score = 71.7 bits (168), Expect = 6e-13
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Frame = -1
Query: 691 DIEVEXGDD--YVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIF-XXXXXXXXX 521
D+E E G Y LKK+Y ++ + D++PEI +GHN+AD++DPDI
Sbjct: 417 DLENENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDILQRCEELEREE 476
Query: 520 XXXXXAGGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQS--TKPVMPRTSR 347
A +I+ + E RE+ QIR KKA+L E R+ K++ ++P++PR
Sbjct: 477 GLRLEEEAAQEAFQIDGHELTEEQREILGQIRKKKALLIQEHRMKKRTAESRPIVPR-KF 535
Query: 346 AKTKQRSTSKLRKDMEKLGVD 284
K + +T+++ + + +G D
Sbjct: 536 DKDRTFTTNRMGRQLSSMGFD 556
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 34.7 bits (76), Expect = 0.079
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 470 GRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEV---HLQAQEGHG 300
G HR ++G GP + G +G + GEA E+G A H A + ++ + +EG G
Sbjct: 119 GEHRPSERGHGPRQPYRGGGRRGGYTGGEAGDESGRAPHRAYERRSGTGRGYGMKREGAG 178
Query: 299 ETRRGHVGD 273
G V D
Sbjct: 179 RGNWGTVTD 187
>07_03_0161 - 14560287-14560426,14560467-14560707
Length = 126
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 352 RCAASPASWT-ASPGET-RP*GWPSCCVSAG 438
RC A W A+PG T P GWP CC +AG
Sbjct: 7 RCPALAVQWNRAAPGATVPPAGWPRCCGAAG 37
>12_02_0298 + 17041206-17041712
Length = 168
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 540 WQSWRRTRNCARLAACTPRPRS 475
W SW +NCA AA +P PRS
Sbjct: 42 WSSWPSAKNCATTAAPSPAPRS 63
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 164 HHARESKEDGPRGHRQEDQEDGPQGRGGPVHRHQDAEASVSLEXRGVGKT 15
HH++ D ED DG +G P HR + ++ V L V T
Sbjct: 129 HHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYT 178
>01_06_0464 + 29571791-29572240
Length = 149
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 491 RRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDA 360
RR + RAG R G++GTG A G +G S H G+A
Sbjct: 73 RRVRHRAGLLRAGEEGTGGA-VPGVGRRRGSTSAASRPHGGGEA 115
>09_06_0354 - 22490833-22491417
Length = 194
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 436 RQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSET 272
++ NKK K+ + LVK TK V T+ A+ + T ++ D K G ET
Sbjct: 6 KEAANKKKKKKEVAVLVKTKTKVVQLTTTTAELELEPTVTVQVDDNKTGAAADET 60
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 496 CRQPRAVPRPSPTLPVYQRCPGRYSRRCCVPPRSPG*R 609
C + R PRP L PG RR PP PG R
Sbjct: 144 CHRARPPPRPGGRLVPVAASPGSPGRRLAQPPPRPGGR 181
>06_03_1392 -
29842084-29842176,29842743-29842817,29842906-29842998,
29843125-29843145,29843537-29843616,29843768-29843856,
29844034-29844071,29844168-29844261,29844548-29844640,
29844929-29845002
Length = 249
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 457 REIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSR 347
R++ EL ++R+ K ++KD R+VK P T+R
Sbjct: 42 RQLEELTDKMRDCKRLIKDFERVVKDMAGSTDPETAR 78
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 173 GRPHHARESKEDGPRGHRQEDQEDGPQGRGGPVHRHQDAEASVSLEXRGVGKTXP 9
G+P A S PRGH++ + P G+GG ++ L+ G+ + P
Sbjct: 2 GKPKPA--SATAAPRGHKRRPKRTRPSGKGGGPEPREEKRKRRELDGVGLAEESP 54
>12_02_1164 + 26620779-26621087
Length = 102
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 491 RRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQ-AEVHLQA 315
R A GR E DQG +E H G V+ + GDAA ++Q V +
Sbjct: 15 RYASGPRGRCGEEDQGGDVVGRHEEVHGDGGVAGCGEEEQGGDAAGHGEEEQGGGVARRR 74
Query: 314 QEGHG 300
+E HG
Sbjct: 75 EEVHG 79
>09_04_0682 - 19429007-19429426
Length = 139
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 503 WRHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAA 357
W RRA +RAG R G T ++ Q GEA G+AA
Sbjct: 39 WPMTRRAHERAGGRRSGGDQQADGRTSEKADDQS-WRRGEAAARRGEAA 86
>10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134
Length = 368
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 371 AGDAAHLASQDQAEVHLQAQEGHGETRRG 285
AGDA + A D H +A+ G G+ RRG
Sbjct: 213 AGDALYWALDDGRRRHPRARHGQGDPRRG 241
>06_02_0355 + 15108541-15108589,15108928-15109301,15109947-15110198
Length = 224
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -3
Query: 473 AGRHREG-DQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQE---G 306
AG + EG G P+ Q + VSPG A H + + L D +HL+ E
Sbjct: 113 AGSNEEGGSHGYTPSPVQAKAGASSDVSPGLAAHLSAKRSALERLDGYWLHLRKTEEDLR 172
Query: 305 HGETRRGHVGD 273
H E R V D
Sbjct: 173 HKEDERRVVPD 183
>12_01_0843 + 7891622-7892524
Length = 300
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 473 AGRHREGDQGTG-PADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQEG 306
+G R GD G G PA + GRV+ A A A+ DQA V L A++G
Sbjct: 181 SGAARAGDDGDGAPAFVSDQW---GRVTWKNAAFHRAVAPDAAAPDQARVALAARDG 234
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 110 QEDGPQGRGGPVHRHQDAEASVSLEXRGVGKTXPEI 3
Q G +GRGG RH D A+++ GVG P +
Sbjct: 453 QPQGHRGRGGGTARHPD--AAIAQGGSGVGHNHPRV 486
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 552 SLINWQSWRRTRNCARLAACTPRPRSSWTTP*GRSGNWPG 433
S+ W+ WRR R C R A R P G + W G
Sbjct: 127 SVARWRRWRRRRRCGR-AGWKRGQRDGDAEPEGSAMGWMG 165
>10_08_0298 -
16603417-16603775,16604015-16604203,16604420-16604540,
16604671-16604880
Length = 292
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 484 PKIELDDTVREIRELARQIRN--KKAILKDESRLVKQSTKPVMP--RTSRAKTKQRSTSK 317
PK+ELDD + E+AR + +KA+L +V+ + P + RA + + ++
Sbjct: 117 PKLELDDAFLQKNEIARAVEEELEKAMLAYGYEIVQTLIVDIEPDEKVKRAMNEINAAAR 176
Query: 316 LR 311
LR
Sbjct: 177 LR 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,629
Number of Sequences: 37544
Number of extensions: 307881
Number of successful extensions: 1392
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -