Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o13
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 107 1e-23
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 101 5e-22
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 31 1.1
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.6
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 6.1
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 28 6.1
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 28 6.1
U97006-3|AAC47966.1| 470|Caenorhabditis elegans Hypothetical pr... 28 8.1
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 8.1
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p... 28 8.1
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 107 bits (256), Expect = 1e-23
Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 5/221 (2%)
Frame = -1
Query: 691 DIEVEXGDDYVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIFXXXXXXXXXXXX 512
+IE+E DDY+LDLKK+Y DE+YD++PEIWEGHN+AD++DP+I
Sbjct: 449 EIELEMQDDYILDLKKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEIQSKLENLLREEEL 508
Query: 511 XXAGGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQ 332
G Y + D+ +E +LA QIR K+ +L + + K+ + R ++ +
Sbjct: 509 LEQAGEYESDLDSDDEETKEKLKLALQIREKEKLLTLDHAVNKRIAGRIGSRIHGSRKRD 568
Query: 331 RSTSKLRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXREPSNQPVADPIMRV 152
RS S+L ++ +LGVD+ + D +
Sbjct: 569 RSMSRLENELGELGVDVDTKKMKNLQGQCAKPQLGKKMKVGRSRSLSAVRPAPRDELAFP 628
Query: 151 KVKRMAHAAIAKKTKKMGL-----KGEADRFIGTKMPKHLF 44
++ AH + GL KGEADR + PKHLF
Sbjct: 629 DEEKRAHVDKLRTKAMRGLRREAKKGEADRHVYDLKPKHLF 669
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 101 bits (242), Expect = 5e-22
Identities = 50/137 (36%), Positives = 79/137 (57%)
Frame = -1
Query: 691 DIEVEXGDDYVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIFXXXXXXXXXXXX 512
+IE+E DDY+LDLKK+Y DE+YD++PEIWEGHN+AD++DP+I
Sbjct: 449 EIELEMQDDYILDLKKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEIQSKLENLLREEEL 508
Query: 511 XXAGGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQ 332
G Y + D+ +E +LA QIR K+ +L + + K+ + R ++ +
Sbjct: 509 LEQAGEYESDLDSDDEETKEKLKLALQIREKEKLLTLDHAVNKRIAGRIGSRIHGSRKRD 568
Query: 331 RSTSKLRKDMEKLGVDM 281
RS S+L ++ +LGVD+
Sbjct: 569 RSMSRLENELGELGVDV 585
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 154 VKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLF 44
V K+M + ++G KGEADR + PKHLF
Sbjct: 585 VDTKKMKNLQGQCAKPQLGKKGEADRHVYDLKPKHLF 621
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 194 GTLQPAG--GRPHHARESKEDGPRGHRQEDQEDGPQGRGGP 78
G PAG G+P ++ +DGP G D + GP G GP
Sbjct: 159 GPAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEAGP 199
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 451 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 284
+ + RQ +L+ +S + + T+ + + R+K + T LRKDM++L D
Sbjct: 749 VADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 451 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 284
+ + RQ +L+ +S + + T+ + + R+K + T LRKDM++L D
Sbjct: 749 VADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 451 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 284
+ + RQ +L+ +S + + T+ + + R+K + T LRKDM++L D
Sbjct: 749 VADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 191 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQG--RGGPVHRHQDAEASVSL-EXRGVG 21
T P GRP K +E GP+G RGGP R E+S S E RG
Sbjct: 351 TGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGP--RKSSEESSESREEPRGPR 408
Query: 20 KTXP 9
++ P
Sbjct: 409 RSPP 412
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 191 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQG--RGGPVHRHQDAEASVSL-EXRGVG 21
T P GRP K +E GP+G RGGP R E+S S E RG
Sbjct: 372 TGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGP--RKSSEESSESREEPRGPR 429
Query: 20 KTXP 9
++ P
Sbjct: 430 RSPP 433
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 191 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQG--RGGPVHRHQDAEASVSL-EXRGVG 21
T P GRP K +E GP+G RGGP R E+S S E RG
Sbjct: 357 TGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGP--RKSSEESSESREEPRGPR 414
Query: 20 KTXP 9
++ P
Sbjct: 415 RSPP 418
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 176 GGRPHHARESKEDGPRGHRQEDQEDGPQGRGGP 78
GGRP + GPRG + + G GR GP
Sbjct: 189 GGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPGP 221
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 385 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 269
+ +T+P +PRT RA TK +T + R+ + D + G
Sbjct: 332 QSATEPPIPRTKRAYTKNPNTIRKRRMKKNQSDDEEDDG 370
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 385 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 269
+ +T+P +PRT RA TK +T + R+ + D + G
Sbjct: 373 QSATEPPIPRTKRAYTKNPNTIRKRRMKKNQSDDEEDDG 411
>U97006-3|AAC47966.1| 470|Caenorhabditis elegans Hypothetical
protein C13F10.6 protein.
Length = 470
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 646 KNYTEIPEDERYDVIPEIWEGHNIADYI-DPDIF 548
+N +++PEDER +++ G+N D I +PD+F
Sbjct: 66 RNCSDVPEDERSEIV-----GYNYKDTIQNPDVF 94
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 185 QPAGGRPHHARESKEDGPRGHRQEDQEDGPQGRGGP 78
Q GRP A GPRG + G GR GP
Sbjct: 179 QGDAGRPGAAGRPGPPGPRGEPGTEYRPGQAGRAGP 214
>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
protein 36 protein.
Length = 1249
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 652 LKKNYTEIPEDERYDVIPEIWEG-HNIADYI 563
LK+NY ++ E+E++D E+ + H I DY+
Sbjct: 49 LKQNYEKLVEEEQFDPRAELKKSKHRIEDYL 79
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 481 KIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKP-VMPRTSRAKTKQRSTSKLRKD 305
K+E RE + L + R +K LK+E+R K+ K +M K + S ++++++
Sbjct: 314 KLEKQAMKREKQRLKEEEREEKLRLKEENREKKRREKARIMELKRLEKVYRTSNARIQEN 373
Query: 304 MEK 296
EK
Sbjct: 374 HEK 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,979,245
Number of Sequences: 27780
Number of extensions: 223940
Number of successful extensions: 1434
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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