Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o13
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   7.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 451 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKT 338
           +REL +    K  ++K   R +K   K     T  AKT
Sbjct: 421 LRELTQVTEEKPRVMKMGKRNIKAQVKRFRMETKAAKT 458


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 518 LVLLQLCQFIKDVRVD 565
           L ++++ QFI DVR+D
Sbjct: 49  LKIIEILQFILDVRLD 64


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 488 RAQDRAGRHREGDQGTGPADTQQEGHPQGRVS 393
           R Q +A +H+     T P   QQ+  PQG  S
Sbjct: 224 RQQQQAQQHQ--GVVTSPLSQQQQAAPQGAAS 253


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 518 LVLLQLCQFIKDVRVD 565
           L ++++ QFI DVR+D
Sbjct: 17  LKIIEILQFILDVRLD 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,754
Number of Sequences: 438
Number of extensions: 2503
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)