Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o11
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 38 0.002
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 35 0.011
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 33 0.044
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 31 0.18
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 31 0.18
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 29 0.55
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 29 0.55
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 29 0.96
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 28 1.7
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.7
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 28 1.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.2
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 27 2.9
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 2.9
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 2.9
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 27 3.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 3.9
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 3.9
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 5.1
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 5.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.1
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 6.7
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.9
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.9
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.9
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 37.9 bits (84), Expect = 0.002
Identities = 24/108 (22%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = -2
Query: 331 LFEKSLLDDAEDSNNAANSDDTMLSESQAI-LKKLQIDIAEQTQLNIKRQLDLNKLQQTS 155
L EK L + + SN +++ + + + E+ +K+L+ ++ Q +L + ++LQ
Sbjct: 243 LNEKIQLFEQKRSNYSSDGNISKILETDPTSIKELEEEVETQKRLTALWESKSSELQSEV 302
Query: 154 VFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAAK 11
+QEKL ++ YNN+ + + + + +E +L+ L + Y + ++
Sbjct: 303 AALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSE 350
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 35.1 bits (77), Expect = 0.011
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Frame = -2
Query: 376 NKINDNFDAASLASVLFEKSLLDDAEDSNNAAN---SDDTMLSESQAILKKLQIDIAEQT 206
N + D F++ + A L +KSL A + A N S + LS +Q + ++Q +
Sbjct: 270 NALEDKFNSEA-ARQLLQKSLSIVASNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLK 328
Query: 205 QLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHK-------SFKELQLKRISTEKALK 47
K Q + L + + +QE L+ +KND N+ + KE + K + E +
Sbjct: 329 LETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEALIS 388
Query: 46 SLNDDYAKLAAKNAR 2
+DD+ K +R
Sbjct: 389 HYDDDFRAKELKISR 403
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 33.1 bits (72), Expect = 0.044
Identities = 22/87 (25%), Positives = 45/87 (51%)
Frame = -2
Query: 265 MLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKE 86
+LS Q+ +KK Q D +Q + +L ++++ ++EK + + +D ++ K +
Sbjct: 63 ILSAIQS-MKKQQKDKLQQEN----KDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEY 117
Query: 85 LQLKRISTEKALKSLNDDYAKLAAKNA 5
L+ + K L SLN ++ +L K A
Sbjct: 118 LETENTKLVKTLNSLNSEFLQLLRKIA 144
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 31.1 bits (67), Expect = 0.18
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = -2
Query: 259 SESQAILKKLQIDIAEQTQLNIKRQLDL--NKLQQTSVFMQEKLDRIKN---DYNNMHKS 95
+ QA K +DI E + QL++ +K ++ V + ++IK N+HK+
Sbjct: 208 ARDQARKKSRTVDILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHKN 267
Query: 94 FKELQLKRISTEKALKSLNDDYAKLAAKNA 5
F+++Q + I T L S + + L + A
Sbjct: 268 FQKIQSELIQTNSGLYSTKKELSALQVRYA 297
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = -2
Query: 652 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 542
++ +L+C C ++ EI N M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 460 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLL 311
+ +H N YS+ R +V+ TSV W+K D+ + + ++ K LL
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNVRLGDSLLIPTRIYVKPLL 668
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 29.5 bits (63), Expect = 0.55
Identities = 29/101 (28%), Positives = 44/101 (43%)
Frame = -2
Query: 346 SLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKL 167
SL S +S D E++ A+ S D L Q +KL +D +++ +KRQ+DL K
Sbjct: 2 SLVSYPRSESESDIEEETPLASKSFDPTLF--QHARRKLSVDSTKKSPKRLKRQVDLQKS 59
Query: 166 QQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKS 44
E D I N+ + + L + E A KS
Sbjct: 60 SFNDKTFNES-DVISNERFKSNDLLELLPAPKNQAELAPKS 99
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = -2
Query: 466 RVESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNN 287
RV HF ++ R+V ++K S +W ++ + L ++ LD+ + +N
Sbjct: 282 RVHGFHFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHN 341
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.3 bits (60), Expect = 1.3
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Frame = -2
Query: 349 ASLASVLFEKSLLDDAEDS-NNAANSDDTMLSESQAILKKLQI-----DI--AEQTQLNI 194
A L V + SL + +S + + + ++ L E + K+L++ DI E QL+
Sbjct: 27 AKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSR 86
Query: 193 KRQLDLNKLQQTSVFMQEKLDRIKN-DYNNMH--KSFKELQLKRISTEKALKSLNDDYAK 23
K +L +L+ ++E ++++ D H + + L+ +R E+ L+ + D Y K
Sbjct: 87 KVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDKYTK 146
Query: 22 LAAK 11
+ A+
Sbjct: 147 VKAE 150
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -2
Query: 364 DNFDAASL----ASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLN 197
D F+ AS ASV E+S ++ A NNAA S + + S +++ + + ++AE Q
Sbjct: 833 DEFNGASETVDGASVEAERSAMEAAA-LNNAAESTEVVGSSPESVASEQEENVAESAQAR 891
Query: 196 IK 191
++
Sbjct: 892 VE 893
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 190 RQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDY 29
R L+ N + + Q++++R+ Y+N+ +E LK + EK DDY
Sbjct: 448 RDLEFNDEDEDEI-EQDEIERVLQKYDNIPLLNEEQALKEKNVEKDFIQWKDDY 500
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -2
Query: 244 ILKKLQI---DIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLK 74
+++KL+I + + + N++ +L + +L + + ++DR K ++ + + LQL+
Sbjct: 127 LIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQ 186
Query: 73 RISTEKALKSLNDDYAKLAAKNAR 2
++ DDY K+ +N R
Sbjct: 187 N-------ENFKDDYEKIKEENKR 203
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 292 NNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFM 146
NN + D+T+ +E+ KK + A L ++L LN +TS+F+
Sbjct: 524 NNVPSGDNTLSTEALQDKKKSEELTAHSKILQAAKKLRLNSTLRTSIFV 572
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -2
Query: 310 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK-LQQTSVFMQE-- 140
DD +D D ++ +S +KK++ D+ E + +L K Q + E
Sbjct: 751 DDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFT 810
Query: 139 -KLDRIKNDYNNMHKSFKELQ 80
L++ +NDYN + ++L+
Sbjct: 811 PILEKSENDYNGVKLECEQLE 831
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = -2
Query: 382 QWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKL-QIDIA-EQ 209
Q K N A+ LA + ++ +++ + S+ SQ +L+ L QI+++ +Q
Sbjct: 24 QHQKSQSNQIASCLAEMNTKQEVVNQTIGQLGRSISE-VQQQNSQLVLQSLNQINMSMQQ 82
Query: 208 TQLNIKRQLD-LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKE 86
L I+ +NKL+QT M K + ++ + N+ K+ +
Sbjct: 83 VALGIQDYASRINKLEQTMSDMNLKFEALQKEQNSNTKTLAD 124
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 460 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 365
+ LH N+YS+ R ++ V+ SV W +N
Sbjct: 78 KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/110 (21%), Positives = 44/110 (40%)
Frame = -2
Query: 421 VVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAI 242
VVDV+K S A + D FE D + S + N D +++
Sbjct: 43 VVDVLKVKSESSADELEERDAHLDRFRRDSTFESETSDHEDFSGGSENELDEETTKNANS 102
Query: 241 LKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSF 92
+KK+ ++ E+ + IKR + + KL +I + Y + + +
Sbjct: 103 IKKISLEEVEKQRKAIKRSGVIYLSRIPPYMAPNKLRQILSQYGKIGRVY 152
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/89 (19%), Positives = 42/89 (47%)
Frame = -2
Query: 295 SNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKND 116
S+ + ++T +S+ QI+ E+ I + D KLQ+ + E+ +++ +
Sbjct: 176 SSQTVHEENTAALDSEIDELMKQINEKEEKIEEISDETD--KLQKLLRELDEEKEKVYAE 233
Query: 115 YNNMHKSFKELQLKRISTEKALKSLNDDY 29
+ + + Q+K++S E+ N ++
Sbjct: 234 EQEFYNNLNQFQIKKLSLERQYDCANLEF 262
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -2
Query: 190 RQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYA 26
R+ ++ + ++T + DR++ +M S + L+ +K L++L DDYA
Sbjct: 235 RRREIRQARKTRRSDAQSYDRLRRLRQSMETSLQLLEQVYKREQKKLQALEDDYA 289
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 333 TLAKEAASKLSFILF--HCATLVTL-HLITSTTFRFML*TLKC-KLSTLHRGHGIFFRFL 500
+++++ AS+L + LF H A L++L +L T ML + + LHRGH + F
Sbjct: 281 SISQQKASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDEYTFA 340
Query: 501 ILRMHIE 521
+L +E
Sbjct: 341 MLEQLLE 347
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 649 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 542
E +KL+ ++ +SV +YF++P R ++P++ D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 652 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 515
+E++K + + +AE F+Q + +T I L C +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.1
Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Frame = -2
Query: 397 VTSVAQW-NKINDNFDAAS-LASVLFEKSLLDDAEDSNNAANSDDTMLSE--SQAILKKL 230
+ SV Q N +N+ S LA++ E +L S+N + + + ++ S+ +
Sbjct: 126 INSVTQKSNLLNELKQVRSKLAALEHENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYF 185
Query: 229 QIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKAL 50
Q + +Q + L + + + EKLD+ + DY + + ++ + +
Sbjct: 186 QKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASN 245
Query: 49 KSLNDDYAKL 20
KSL + +L
Sbjct: 246 KSLRGEQERL 255
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 6.7
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Frame = -2
Query: 400 SVTSV-AQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQI 224
S TS+ A + + +D+ +L ++L + ++ + A S D L + K+
Sbjct: 65 SATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTKER-- 122
Query: 223 DIAEQTQLNIKRQLDL---NKLQQTSVFMQEKLDRIKNDYNN-MHKSFKELQLKRISTEK 56
D A + + ++ V M E D++K + + K+F+EL KR T+
Sbjct: 123 DEAREALAKFSDNIGTVSSKTIEVQEVEMGESDDQLKTSLRSTVEKTFQELSSKRKRTKL 182
Query: 55 ALKSLNDD 32
K DD
Sbjct: 183 QPKWATDD 190
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -2
Query: 274 DDTMLSESQAILKKLQIDIAEQTQ--LNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMH 101
DDT SESQ + L QTQ + + + +L+ + +V E + + + +H
Sbjct: 180 DDTFFSESQRVTSPLTTSQTVQTQPPQSPEAKTELSLINTKTVIFPENYEDGPSFRSMLH 239
Query: 100 KSFKELQLKRISTEKALKSL 41
+ ++ L + +K +K +
Sbjct: 240 ELEQKSSLMKYYCKKIMKRI 259
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/110 (20%), Positives = 51/110 (46%)
Frame = -2
Query: 385 AQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQT 206
A +IN+ ++ L ++LL + + + ++ L +++ L+ L+ + A
Sbjct: 911 ASLKQINNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLRENNATVL 970
Query: 205 QLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEK 56
+ LQ+T V +LD++ Y + +K+ E+Q R++ +K
Sbjct: 971 SEKAEFNEQCKSLQETIVTKDAELDKL-TKYISDYKT--EIQEMRLTNQK 1017
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/33 (30%), Positives = 12/33 (36%)
Frame = -2
Query: 550 ELDTCKHQLCSMCXXXXXXXXXIPCPLCRVESL 452
+L CKH C CPLCR +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 322 KSLLDDAEDSNNAANSDDTMLSESQAILKK-LQIDIAEQTQLNIKRQLDLNKLQQTSVFM 146
+ L + + S++ + D+ S+ Q + K+ +++ + Q N+ + DLN L+Q S
Sbjct: 38 QELQEKVKFSSSRFYNKDSTYSKDQGLAKESAALELQKLKQENVLLRKDLNNLEQISDCY 97
Query: 145 QEKLDRI 125
+ +D I
Sbjct: 98 AKGMDDI 104
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -2
Query: 265 MLSESQAILKKL---QIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKS 95
+ +E Q+I + L Q +I+ + L+ + L+ +++ + K ++ DY N+
Sbjct: 921 LYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQTISSKYKELEKDYLNIMAD 980
Query: 94 FKELQLKRISTEKALKSLNDDYAKLAAKNAR 2
++ + EKA+ N + +L K R
Sbjct: 981 YQHSSQHLSNLEKAINEKNLNIRELNEKLMR 1011
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,270
Number of Sequences: 5004
Number of extensions: 43700
Number of successful extensions: 197
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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