Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o11
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016666-6|AAB66086.1| 292|Caenorhabditis elegans Hypothetical ... 36 0.024
AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical ... 35 0.055
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 35 0.073
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 34 0.096
AL033514-27|CAA22088.1| 363|Caenorhabditis elegans Hypothetical... 34 0.096
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 34 0.096
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 33 0.22
U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical pr... 33 0.22
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 33 0.22
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 33 0.29
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 33 0.29
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 33 0.29
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 31 0.68
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 31 0.68
U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical pr... 31 0.68
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 31 0.89
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 30 1.6
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical ... 30 1.6
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 30 2.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 30 2.1
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 30 2.1
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 30 2.1
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 30 2.1
CU457741-9|CAM36350.2| 252|Caenorhabditis elegans Hypothetical ... 30 2.1
AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine r... 30 2.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.7
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 29 2.7
AF016666-4|AAB66082.1| 331|Caenorhabditis elegans Hypothetical ... 29 2.7
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 29 4.8
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 29 4.8
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 29 4.8
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 29 4.8
AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 28 8.3
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 28 8.3
U80450-6|AAB37831.1| 544|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical... 28 8.3
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 8.3
>AF016666-6|AAB66086.1| 292|Caenorhabditis elegans Hypothetical
protein B0281.8 protein.
Length = 292
Score = 36.3 bits (80), Expect = 0.024
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Frame = -2
Query: 538 CKHQLCSMCXXXXXXXXXIPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQWNK 371
C H LC C + CP CR E +N+ S+++N ++ +IK VT + K
Sbjct: 28 CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKNFSLIQMIKI-VTKTTEVEK 86
Query: 370 INDNF------------DAASLASVLFEKSLL---DDAEDSNNAANSDDTMLSESQAILK 236
DNF + A + S K+ L E + ++ + +++++ K
Sbjct: 87 NWDNFPPKCVEHPYNVAEFACIESNCSSKNKLMCQTCEEFGAHKGHAKELLITKTDKFRK 146
Query: 235 KLQIDIAEQTQLNIKR-QLDLNKLQQTSVFMQE----KLDRIKNDYNNMHKS 95
KL+ I Q +LNI+ + N+L++ V ++ K+ +IKN ++ + +S
Sbjct: 147 KLEFWI-NQLKLNIQNCTVKKNELEEAVVKSEQLLNIKVKKIKNHFDKIRQS 197
>AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical
protein Y67D8B.1 protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -2
Query: 652 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXIPCP 473
M KL +CF ++ +P D ++PV L C H +C +C CP
Sbjct: 1 MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCP 56
Query: 472 LCRVESLHFNVYS 434
+C N+ S
Sbjct: 57 ICENPEAFGNIIS 69
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/84 (21%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -2
Query: 388 VAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQ 209
+ Q ++++ NF L + + + L+DD ++ A + + + +QA+ +K+ + E+
Sbjct: 498 IQQLDQVHQNFMRYKLLMLRYSEYLIDDCDEKEKAQEAIQKLENVTQAVNQKMGLPTTEE 557
Query: 208 -TQLNIKRQLDLNKLQQTSVFMQE 140
T+L + Q N L+ V +++
Sbjct: 558 LTKLYYRFQCQFNVLEPGRVLIRQ 581
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 34.3 bits (75), Expect = 0.096
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 652 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXIPCP 473
+EF +QC+ICF V N+ +P+ L TCKH +C+ C + CP
Sbjct: 19 LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGCAGRWLSSCSV-CP 62
Query: 472 LC--RVESLHFN 443
+C RV +H N
Sbjct: 63 MCRTRVREIHLN 74
>AL033514-27|CAA22088.1| 363|Caenorhabditis elegans Hypothetical
protein Y75B8A.28 protein.
Length = 363
Score = 34.3 bits (75), Expect = 0.096
Identities = 22/89 (24%), Positives = 47/89 (52%)
Frame = -2
Query: 331 LFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSV 152
+++KSLL+ +D D +++E +KK ++D+A + N K + K+ Q V
Sbjct: 275 IWQKSLLERQKD-------DTLVVAEKLQNIKKRELDVATYNKDNKKEMAEREKVSQ--V 325
Query: 151 FMQEKLDRIKNDYNNMHKSFKELQLKRIS 65
+ +R+K D+ +H +++ L+ +S
Sbjct: 326 TFATRHNRVKMDFETIHYNYEAKVLEYVS 354
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = -2
Query: 178 LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAAKN 8
L Q+ + QEKL +++ DY+++H+ F L+L+ EK ++ KLAAK+
Sbjct: 1659 LQMTQERLIESQEKLIQMERDYSSLHEKFDRLKLRFDRDEKPTGAVLVLSDKLAAKD 1715
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 33.1 bits (72), Expect = 0.22
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Frame = -2
Query: 355 DAASLASVLF-EKSLLDDAE----DSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIK 191
+ AS+ S+L E+SLL++ + +++ N L+ES+ K + ++ E L
Sbjct: 421 ELASMGSLLDKERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELKEHADLVEN 480
Query: 190 RQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLK-----RISTEKALKSLNDDYA 26
L LNKLQ+ S + EK+ + + ++ ++K + S+EK K+ + A
Sbjct: 481 LTLQLNKLQENSKDLMEKISAGEGGAKMAIEQLEQEKVKLTNELQTSSEKTKKASGELEA 540
Query: 25 KLA 17
K++
Sbjct: 541 KIS 543
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 33.1 bits (72), Expect = 0.22
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Frame = -2
Query: 355 DAASLASVLF-EKSLLDDAE----DSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIK 191
+ AS+ S+L E+SLL++ + +++ N L+ES+ K + ++ E L
Sbjct: 423 ELASMGSLLDKERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELKEHADLVEN 482
Query: 190 RQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLK-----RISTEKALKSLNDDYA 26
L LNKLQ+ S + EK+ + + ++ ++K + S+EK K+ + A
Sbjct: 483 LTLQLNKLQENSKDLMEKISAGEGGAKMAIEQLEQEKVKLTNELQTSSEKTKKASGELEA 542
Query: 25 KLA 17
K++
Sbjct: 543 KIS 545
>U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical
protein F42C5.4 protein.
Length = 712
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = -2
Query: 652 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXIPCP 473
+ FV L C+ C S+ + +F R + +C H LCS C CP
Sbjct: 22 LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQC-----FDKFTECP 70
Query: 472 LCRVESLHFNVYSINRNVVDVIKCSVTSVAQ--WNKINDNFDAAS 344
+C+ + Y R +V+ K + T + + WN + + S
Sbjct: 71 ICKEPLVRSENYQA-RKIVEHFKENPTMIIEKWWNSTANGSETCS 114
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 33.1 bits (72), Expect = 0.22
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Frame = -2
Query: 355 DAASLASVLF-EKSLLDDAE----DSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIK 191
+ AS+ S+L E+SLL++ + +++ N L+ES+ K + ++ E L
Sbjct: 423 ELASMGSLLDKERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELKEHADLVEN 482
Query: 190 RQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLK-----RISTEKALKSLNDDYA 26
L LNKLQ+ S + EK+ + + ++ ++K + S+EK K+ + A
Sbjct: 483 LTLQLNKLQENSKDLMEKISAGEGGAKMAIEQLEQEKVKLTNELQTSSEKTKKASGELEA 542
Query: 25 KLA 17
K++
Sbjct: 543 KIS 545
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 32.7 bits (71), Expect = 0.29
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = -2
Query: 325 EKSLLD-DAEDSNNAANSDDTMLSESQAILKKLQIDIAE-QTQLNIK-RQLD-----LNK 170
EKS L D E+S +A +S+ + + LK +++ +E QT+ + + RQL N+
Sbjct: 1233 EKSKLQRDLEESQHATDSEVRSRQDLEKALKTIEVQYSELQTKADEQSRQLQDFAALKNR 1292
Query: 169 LQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
L + + L+ + N N++H+ LQ + T + + + LAA
Sbjct: 1293 LNNENSDLNRSLEEMDNQLNSLHRLKSTLQSQLDETRRNYDEESRERQALAA 1344
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 32.7 bits (71), Expect = 0.29
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = -2
Query: 325 EKSLLD-DAEDSNNAANSDDTMLSESQAILKKLQIDIAE-QTQLNIK-RQLD-----LNK 170
EKS L D E+S +A +S+ + + LK +++ +E QT+ + + RQL N+
Sbjct: 1233 EKSKLQRDLEESQHATDSEVRSRQDLEKALKTIEVQYSELQTKADEQSRQLQDFAALKNR 1292
Query: 169 LQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
L + + L+ + N N++H+ LQ + T + + + LAA
Sbjct: 1293 LNNENSDLNRSLEEMDNQLNSLHRLKSTLQSQLDETRRNYDEESRERQALAA 1344
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = -2
Query: 310 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLD 131
D+ E+ NS+ + + + ++KLQ D + +L + D+ L++ QE L+
Sbjct: 179 DEIEELKKKVNSESSRATLADEAVQKLQTD---KDKLEEEYMNDMRDLKKALKDNQEGLE 235
Query: 130 RIKNDYNNMHKSFKELQLKRISTE 59
+I D N +EL+ K +S+E
Sbjct: 236 KIAKDVKNKEGEIEELK-KSVSSE 258
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
protein F35G12.8 protein.
Length = 1549
Score = 31.5 bits (68), Expect = 0.68
Identities = 29/149 (19%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Frame = -2
Query: 460 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDD-AEDSN-- 290
E + V +++ T+ + +K D F+ S A +K + + A+ SN
Sbjct: 439 EKAERKIAKCQEEVEQLLEIEKTANEEADKNLDEFEKRSEAPKEEQKKIQETWAQKSNEF 498
Query: 289 NAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYN 110
N + + E LKKL ++ + +K++L+ + +++ +++LD++K +++
Sbjct: 499 NKVRGEARIAREDFEDLKKLANSGTDKL-IELKKRLESS--EESYAKEKDELDKLKPEFD 555
Query: 109 NMHKSFKELQLKRISTEKALKSLNDDYAK 23
+ + K+L + + + N D AK
Sbjct: 556 SWNDKLKQLSTELPTLRNTARQKNQDLAK 584
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 31.5 bits (68), Expect = 0.68
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Frame = -2
Query: 394 TSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIA 215
T VA+WNKI DN A+ + +DD +D+ +L +Q KK I +
Sbjct: 416 TIVARWNKIFDNMGFIESAAYAI-AAFMDD--------KNDEPILKPAQE--KKEIIKLE 464
Query: 214 EQTQLNIKRQLDLN-KLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLN 38
++T +++++ D N K ++ S Q K +K+ NM K K +K + +K L+ LN
Sbjct: 465 DRTD-SVEKESDKNTKNKKKSSGEQNK--TVKSGAENM-KILKPDAVKYVEKQKELEKLN 520
>U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical
protein F48E3.9 protein.
Length = 272
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = -2
Query: 265 MLSESQAILKKL---QIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKS 95
M+SE +++L++L Q I E +++L + + + +KL +D +++ S
Sbjct: 1 MVSEKKSLLEELLHMQKRIDELAPACAEKELKIVAKDNEKLDLSKKLRLANSDISHLQTS 60
Query: 94 FKELQLKRISTEKALKSLNDDYAKLAAK 11
L+ + S + LKS+NDD L ++
Sbjct: 61 MMHLRDEVSSKDNELKSMNDDILYLKSQ 88
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 31.1 bits (67), Expect = 0.89
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = -2
Query: 262 LSESQAILKKLQIDIAEQTQLNIKRQLDLN-KLQQTSVFMQEKLDRIKNDYNNMHKSFKE 86
+ E +A KKLQ I E+ + N + L+ N KL++ EK++ K ++++ ++ +
Sbjct: 544 IQEVKADNKKLQ-QILEEVRQNQSKVLEENVKLRKGMAEAIEKIEEFKRNWHSSREAGER 602
Query: 85 LQLK-RISTEKALK 47
LQL+ + + EK LK
Sbjct: 603 LQLEAKENEEKVLK 616
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/88 (25%), Positives = 49/88 (55%)
Frame = -2
Query: 271 DTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSF 92
+ +L+E Q + K+L + E+ +L ++ + KL + Q++++R+K+D N++
Sbjct: 12 NALLAEKQELRKQLDREQNEKQELFMQINSMIAKLADSGD--QDEINRLKSDVNSLK--- 66
Query: 91 KELQLKRISTEKALKSLNDDYAKLAAKN 8
+EL+ ++I++ L + K AKN
Sbjct: 67 RELEAEKIASNAEAARLKSELQK--AKN 92
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/88 (25%), Positives = 49/88 (55%)
Frame = -2
Query: 271 DTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSF 92
+ +L+E Q + K+L + E+ +L ++ + KL + Q++++R+K+D N++
Sbjct: 12 NALLAEKQELRKQLDREQNEKQELFMQINSMIAKLADSGD--QDEINRLKSDVNSLK--- 66
Query: 91 KELQLKRISTEKALKSLNDDYAKLAAKN 8
+EL+ ++I++ L + K AKN
Sbjct: 67 RELEAEKIASNAEAARLKSELQK--AKN 92
>AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical
protein F40G9.14 protein.
Length = 261
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = -2
Query: 649 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXIPCPL 470
E+V +C ICF E+ P + C H C C I CP
Sbjct: 132 EYVDDECKICFEKYEVTGN-RSP----------RVFNCGHTYCESCIQVCKHQFQIKCPF 180
Query: 469 CRVESLHFNVYSINRNVVDVI 407
C S N +S N+ +++V+
Sbjct: 181 CTTTSYQIN-FSTNKLILEVL 200
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -2
Query: 583 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXIPCPLCRVESLHFNVYSINRNVVDV 410
PI + +I + C H+ C +C CP+CR + N+++ V+D+
Sbjct: 13 PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/83 (22%), Positives = 42/83 (50%)
Frame = -2
Query: 262 LSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKEL 83
++ESQ + + A++ + + +Q K + ++ +Q+ +D + + +
Sbjct: 552 IAESQVKEFLNKFENADEARRRLDKQFADAKREISN--LQKSVDEAERNSRRTDDKLRAS 609
Query: 82 QLKRISTEKALKSLNDDYAKLAA 14
+ +R++ EKA K L D+ AKL A
Sbjct: 610 EAERVAAEKARKFLEDELAKLQA 632
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 328 FEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVF 149
F+KS DDA + + + E K +ID + N+ R+ N+L+
Sbjct: 634 FQKSSTDDARKLRDEMDEHTNSIQEEF----KTRIDELNRRVENLLREN--NRLKSEVNP 687
Query: 148 MQEKLDRIKNDYNNMHKSF--KELQLK-----RISTEKALKSLNDDYAKLAAKNAR 2
+++K ++N+YN+ + KE Q++ R + +K L L + Y ++ N +
Sbjct: 688 LKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK 743
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/83 (22%), Positives = 42/83 (50%)
Frame = -2
Query: 262 LSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKEL 83
++ESQ + + A++ + + +Q K + ++ +Q+ +D + + +
Sbjct: 625 IAESQVKEFLNKFENADEARRRLDKQFADAKREISN--LQKSVDEAERNSRRTDDKLRAS 682
Query: 82 QLKRISTEKALKSLNDDYAKLAA 14
+ +R++ EKA K L D+ AKL A
Sbjct: 683 EAERVAAEKARKFLEDELAKLQA 705
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 328 FEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVF 149
F+KS DDA + + + E K +ID + N+ R+ N+L+
Sbjct: 707 FQKSSTDDARKLRDEMDEHTNSIQEEF----KTRIDELNRRVENLLREN--NRLKSEVNP 760
Query: 148 MQEKLDRIKNDYNNMHKSF--KELQLK-----RISTEKALKSLNDDYAKLAAKNAR 2
+++K ++N+YN+ + KE Q++ R + +K L L + Y ++ N +
Sbjct: 761 LKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK 816
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/83 (22%), Positives = 42/83 (50%)
Frame = -2
Query: 262 LSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKEL 83
++ESQ + + A++ + + +Q K + ++ +Q+ +D + + +
Sbjct: 625 IAESQVKEFLNKFENADEARRRLDKQFADAKREISN--LQKSVDEAERNSRRTDDKLRAS 682
Query: 82 QLKRISTEKALKSLNDDYAKLAA 14
+ +R++ EKA K L D+ AKL A
Sbjct: 683 EAERVAAEKARKFLEDELAKLQA 705
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 328 FEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVF 149
F+KS DDA + + + E K +ID + N+ R+ N+L+
Sbjct: 707 FQKSSTDDARKLRDEMDEHTNSIQEEF----KTRIDELNRRVENLLREN--NRLKSEVNP 760
Query: 148 MQEKLDRIKNDYNNMHKSF--KELQLK-----RISTEKALKSLNDDYAKLAAKNAR 2
+++K ++N+YN+ + KE Q++ R + +K L L + Y ++ N +
Sbjct: 761 LKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK 816
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = -2
Query: 244 ILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIS 65
+ K L E T ++ L++ + ++EKL++ KND + EL ++++
Sbjct: 175 VTKDLHDKNEELTSFRMEYVTKLSEANREKKALEEKLEKYKNDMKENDRKSLELNKEQVT 234
Query: 64 TEKALKSL 41
T+ L +
Sbjct: 235 TQNVLSEV 242
>CU457741-9|CAM36350.2| 252|Caenorhabditis elegans Hypothetical
protein C42C1.9 protein.
Length = 252
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = -2
Query: 232 LQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKA 53
L+ +++ + LN +D +++ + F+ L R K N + + ++TEK+
Sbjct: 38 LECNMSNRESLNESLFMDYDQISEDYDFVTYALLREKRSSKNNNMKTSHVITSTLNTEKS 97
Query: 52 LKSLNDDYAK 23
L++ D+Y K
Sbjct: 98 LETYLDEYGK 107
>AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 62 protein.
Length = 317
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2
Query: 253 SQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNN 107
S AIL ++++A +++NIK++L L + V+ E + + N N+
Sbjct: 207 STAILASKKVEVASSSKMNIKKKLTKISLTYSVVYTAEVIWSVLNSLNS 255
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = -2
Query: 313 LDDAEDSNNAANSDDTMLSESQAILKKLQID-IAEQTQLNIKRQLDLNKLQQ--TSVFMQ 143
L D+ +DD + E+ A LKK D + ++ +K++ D +KL+Q + +
Sbjct: 7009 LKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKEND-DKLKQEADAKLKK 7067
Query: 142 EKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
E D++K + + + + +LK+ + K L+ NDD K A
Sbjct: 7068 ENDDKLKQEADAKLQKENDDKLKQEADAK-LQKENDDKLKQEA 7109
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = -2
Query: 313 LDDAEDSNNAANSDDTMLSESQAILKKLQID-IAEQTQLNIKRQLDLNKLQQ--TSVFMQ 143
L D+ +DD + E+ A LKK D + ++ +K++ D +KL+Q + +
Sbjct: 7029 LKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKEND-DKLKQEADAKLKK 7087
Query: 142 EKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
E D++K + + + + +LK+ + K L+ NDD K A
Sbjct: 7088 ENDDKLKQEADAKLQKENDDKLKQEADAK-LQKENDDKLKQEA 7129
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = -2
Query: 313 LDDAEDSNNAANSDDTMLSESQAILKKLQID-IAEQTQLNIKRQLDLNKLQQ--TSVFMQ 143
L D+ +DD + E+ A LKK D + ++ +K++ D +KL+Q + +
Sbjct: 7029 LKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKEND-DKLKQEADAKLKK 7087
Query: 142 EKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
E D++K + + + + +LK+ + K L+ NDD K A
Sbjct: 7088 ENDDKLKQEADAKLQKENDDKLKQEADAK-LQKENDDKLKQEA 7129
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = -2
Query: 280 NSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDR--------I 125
N+ T S S K ++I+ E ++L I +++ L+++ V Q DR +
Sbjct: 217 NARTTHNSNSSRFGKFIRIEFDENSKL-IGAKIECYLLEKSRVVFQSDGDRNFHIFYQML 275
Query: 124 KNDYNNMHKSFKELQLKRISTEKALKSLNDD 32
N ++N HKSF +L K+++ K L+ NDD
Sbjct: 276 SNYFDNPHKSFLKLS-KKVNEYKYLR--NDD 303
>AF016666-4|AAB66082.1| 331|Caenorhabditis elegans Hypothetical
protein B0281.3 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -2
Query: 538 CKHQLCSMCXXXXXXXXXIPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQ 380
C H LC C I CP CR E N+ S+++N ++ VIK ++ A+
Sbjct: 57 CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIKTTLVEEAE 113
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 538 CKHQLCSMCXXXXXXXXXIPCPLCRVESLHFNVYSINRN 422
C H +C C I CP CR E+ +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = -2
Query: 271 DTMLSESQAILKKLQI--------DIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKND 116
D++ S+++ I +KL+I D E QL+I + DL + VF++E++ +++N+
Sbjct: 205 DSLESKNKDIQRKLEIAKQTVEQKDGLENEQLSIAMK-DLADAKHKIVFLEERVSQLENE 263
Query: 115 YNNMHKSFKELQLKRISTEKALKSLNDD 32
+++S K ++ I+ ++ DD
Sbjct: 264 AEKVNESKKAGNIEDIAALGSVLVQKDD 291
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = -2
Query: 271 DTMLSESQAILKKLQI--------DIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKND 116
D++ S+++ I +KL+I D E QL+I + DL + VF++E++ +++N+
Sbjct: 205 DSLESKNKDIQRKLEIAKQTVEQKDGLENEQLSIAMK-DLADAKHKIVFLEERVSQLENE 263
Query: 115 YNNMHKSFKELQLKRISTEKALKSLNDD 32
+++S K ++ I+ ++ DD
Sbjct: 264 AEKVNESKKAGNIEDIAALGSVLVQKDD 291
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = -2
Query: 271 DTMLSESQAILKKLQI--------DIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKND 116
D++ S+++ I +KL+I D E QL+I + DL + VF++E++ +++N+
Sbjct: 205 DSLESKNKDIQRKLEIAKQTVEQKDGLENEQLSIAMK-DLADAKHKIVFLEERVSQLENE 263
Query: 115 YNNMHKSFKELQLKRISTEKALKSLNDD 32
+++S K ++ I+ ++ DD
Sbjct: 264 AEKVNESKKAGNIEDIAALGSVLVQKDD 291
>AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical
protein F43C11.8 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = -2
Query: 652 MEFVKLQ-CNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXX 488
M F++ + CN FS A +N + + +L ++P L+L C H +C C
Sbjct: 1 MSFIECEICNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNS 58
Query: 487 XIPCPLCRVESLHFNVYSINRN 422
I CP CR + V + +N
Sbjct: 59 MILCPFCREATNVSTVKDLQKN 80
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 349 ASLASVLFEK-SLLDDAEDSNNAA--NSDDTMLSESQAILKKLQIDIAEQ 209
+ L + LFE SLL AE N A N DDTML+E + ++ +AE+
Sbjct: 71 SGLGNQLFEVVSLLGMAEVLNRTAIFNKDDTMLNEKLSFFRETVPRVAEK 120
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -2
Query: 202 LNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEK--ALKSLNDDY 29
+N K + +N++ ++ + +N Y +K+ K L++ R+ EK AL + ++
Sbjct: 126 INDKLEDQINEMCKSGKCYLKSFKDAENSYQKFYKADKNLEISRLELEKARALANARNEA 185
Query: 28 AKLAAKN 8
+LA ++
Sbjct: 186 CELAKQD 192
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -2
Query: 202 LNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEK--ALKSLNDDY 29
+N K + +N++ ++ + +N Y +K+ K L++ R+ EK AL + ++
Sbjct: 126 INDKLEDQINEMCKSGKCYLKSFKDAENSYQKFYKADKNLEISRLELEKARALANARNEA 185
Query: 28 AKLAAKN 8
+LA ++
Sbjct: 186 CELAKQD 192
>U80450-6|AAB37831.1| 544|Caenorhabditis elegans Hypothetical
protein M01E11.2 protein.
Length = 544
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = -2
Query: 424 NVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQA 245
+V ++IK S +S+ Q + FD ++ +S + +D + A S+ L + Q
Sbjct: 5 DVTEIIKSSTSSLYQPARKKSRFDDSASSSSQAGQPKPEDILAALEADQSNYVALDDVQ- 63
Query: 244 ILKKLQIDIAEQTQLN----IKRQLDLNKLQQTSVFMQEKLDRIKN--DYNNMHKSFKEL 83
+KKL I + ++ +LN +K D K ++ + + + + + + +++ SF E+
Sbjct: 64 -VKKLVIQLDKKMRLNREQRVKNPDDAQKFMESEIELDKAIQEMHSLASQPDLYGSFVEV 122
>AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical
protein Y111B2A.5a protein.
Length = 434
Score = 27.9 bits (59), Expect = 8.3
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Frame = -2
Query: 460 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAA 281
E LH ++ R V C +AQ N + ++ S A +K +L A
Sbjct: 130 EKLHIETRNLEREVDLRQNCVDEMIAQTNTLQMQQESMSTAMKTLQKQIL---------A 180
Query: 280 NSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLD--RIKNDYNN 107
N + E + +L+ +E+ N++ + ++++ + D +N+ ++
Sbjct: 181 NEREICQLEEKLTESELKTQRSEEKVKNLEDFIVGERMEEAEAEAEAAADGGGARNEVSH 240
Query: 106 MHKSFKELQLKRISTEKALKSLND 35
+ + +LQ K + E+ LK L +
Sbjct: 241 LKRYIADLQSKLSTMEEELKVLRE 264
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 181 DLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
DL K Q + +++ D +KND N K+ +++ K + + L DD KL A
Sbjct: 3168 DLEKNIQKTGDDEKRADELKNDVGNAVKNVEDVVSKYQNQPQPLDVAKDDANKLKA 3223
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 181 DLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
DL K Q + +++ D +KND N K+ +++ K + + L DD KL A
Sbjct: 5025 DLEKNIQKTGDDEKRADELKNDVGNAVKNVEDVVSKYQNQPQPLDVAKDDANKLKA 5080
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 181 DLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
DL K Q + +++ D +KND N K+ +++ K + + L DD KL A
Sbjct: 5928 DLEKNIQKTGDDEKRADELKNDVGNAVKNVEDVVSKYQNQPQPLDVAKDDANKLKA 5983
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 181 DLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
DL K Q + +++ D +KND N K+ +++ K + + L DD KL A
Sbjct: 6831 DLEKNIQKTGDDEKRADELKNDVGNAVKNVEDVVSKYQNQPQPLDVAKDDANKLKA 6886
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 181 DLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 14
DL K Q + +++ D +KND N K+ +++ K + + L DD KL A
Sbjct: 7734 DLEKNIQKTGDDEKRADELKNDVGNAVKNVEDVVSKYQNQPQPLDVAKDDANKLKA 7789
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,157
Number of Sequences: 27780
Number of extensions: 260702
Number of successful extensions: 999
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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