Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o09
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   0.79 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   9.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 370 LRFWVKLRKHHVFVAVLSL 314
           L  W+++ KHH F+ V S+
Sbjct: 119 LSCWLQMTKHHNFIKVCSV 137


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 284 FPTNFWVAARKRKPDTWIV*KLMVWNEERS-SALICSAITMNAQLLPNNLRDFW 126
           FP+N WVA  + +   W+  +   W   ++ S ++C       +  P +L D W
Sbjct: 306 FPSNSWVAINELQDSFWL--EQYSWALFKAMSHMLCIGY---GRFPPQSLTDMW 354


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 284 FPTNFWVAARKRKPDTWIV*KLMVWNEERS-SALICSAITMNAQLLPNNLRDFW 126
           FP+N WVA  + +   W+  +   W   ++ S ++C       +  P +L D W
Sbjct: 274 FPSNSWVAINELQDSFWL--EQYSWALFKAMSHMLCIGY---GRFPPQSLTDMW 322


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 171 YHECSTLTKQLKRFLAIRHERQRQISQGKLTGDEKYVSPRVD 46
           +H C  + K ++    I    +R+    ++  D KYV+  +D
Sbjct: 473 WHHCPEIYKAIEGIRFIADHTKREEDSTRVKEDWKYVAMVLD 514


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 257 WQRPRSWWEIMPPVTSVNG 313
           W+  R+ ++I+P + S NG
Sbjct: 221 WKSARTRFDILPLILSANG 239


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 325 VLSLTVYGCYWWHDFPPTSGSLPERGSQI 239
           +LSLTV+        PPTS ++P  G  +
Sbjct: 288 LLSLTVFFLLLAEIIPPTSLAIPLLGKYL 316


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 325 VLSLTVYGCYWWHDFPPTSGSLPERGSQI 239
           +LSLTV+        PPTS ++P  G  +
Sbjct: 275 LLSLTVFFLLLAEIIPPTSLTVPLLGKYL 303


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 337 VFVAVLSLTVYGCYWWHDFPPTSGSL 260
           V++  LSL++   + W  + P +G++
Sbjct: 22  VWIYALSLSLPPLFGWGSYGPEAGNV 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,808
Number of Sequences: 438
Number of extensions: 2374
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)