Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o08
         (353 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.70 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.70 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   0.70 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   1.2  
EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    22   1.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   2.8  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   2.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   8.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +1

Query: 46  LTLQVQRVPSPGYLRLPSTGAHQSHPLQGPTTLHWWLHR*MCPGRPNLEPPHAQHFP 216
           L +    +PS  Y R   TG    HP   P   H   H  +    P  E P   H P
Sbjct: 210 LPISTSSLPSDFY-RFSPTGLIPPHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKP 265


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +1

Query: 46  LTLQVQRVPSPGYLRLPSTGAHQSHPLQGPTTLHWWLHR*MCPGRPNLEPPHAQHFP 216
           L +    +PS  Y R   TG    HP   P   H   H  +    P  E P   H P
Sbjct: 102 LPISTSSLPSDFY-RFSPTGLIPPHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKP 157


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 226 VDEELRTQNYFTQGIY-FHHLVFKS 297
           +DE   + NYF    Y FH++ F++
Sbjct: 561 IDESSNSSNYFANKTYDFHNMSFEN 585


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 48  NAASTA-GTLPWVSPSSEHRCAPIPPLTGAHHPT 146
           NA S +  +LP +SPS       +PPL G   P+
Sbjct: 192 NAPSVSPASLPSISPSGGFLPKWLPPLQGFSDPS 225


>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 140 VVGPCKGWDWCAPVLGRRRYPGEGTRCTCSVN 45
           +VG C       P  G+R   GE  RC  SV+
Sbjct: 13  IVGLCAAQLNFTPNWGKRAPEGESNRCKESVD 44


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +3

Query: 156 TSMNVPRPAQSRAAACPTLPGSTGR*RTPNAELFHPRHILSSSRF*KRPQSTRTQP 323
           T    PRP  +R  + P+  GS     TP    + P    S+++      +T   P
Sbjct: 403 TISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPP 458


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 342 SCRNFLAAEF 313
           SCRNF AA F
Sbjct: 302 SCRNFTAARF 311


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +1

Query: 97  STGAHQSHPLQGPTTLHWWLHR*MCPGRPNLEPPHAQHFPDRP 225
           +TG   + P + PT    WL+       PN   P       RP
Sbjct: 6   NTGNAGAPPQEMPTWFVRWLNSQQPRNVPNFAAPSTSTAVQRP 48


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 94  PSTGAHQSHPLQGPTTLHWWLHR*MCPGRPNL 189
           PS+     H +   T  HW+L     P +P++
Sbjct: 445 PSSVLSHGHRVIYSTVGHWYLDCGFGPWKPSM 476


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,322
Number of Sequences: 336
Number of extensions: 2168
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)