Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o08
(353 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 34 0.038
SB_23800| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.15
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) 30 0.47
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.82
SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8) 28 1.9
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41) 28 2.5
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 28 2.5
SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_56886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_8940| Best HMM Match : Toxin_23 (HMM E-Value=7.4) 27 3.3
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 27 3.3
SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7) 27 4.4
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 5.8
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 27 5.8
SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 27 5.8
SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09) 27 5.8
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 27 5.8
SB_26436| Best HMM Match : Somatomedin_B (HMM E-Value=3.7) 26 7.7
SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08) 26 7.7
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 26 7.7
>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
Length = 288
Score = 33.9 bits (74), Expect = 0.038
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +3
Query: 75 PWVSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 221
P P P PP TGA PT V PRPA ++A PGS
Sbjct: 206 PRSGPLPPTAAPPPPPTTGAPPPTPVTNKPPPPRPATTQAPPPTAAPGS 254
>SB_23800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 99 HRCAPIPPLTGAHHPTLVATSMNV--PRPAQSRAAAC 203
HRC P + A+HP L+ T V P PAQS + C
Sbjct: 8 HRCQPSRTRSCAYHPALIETLTAVYSPMPAQSDSELC 44
>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
Length = 656
Score = 30.3 bits (65), Expect = 0.47
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 253 SSAFGVLHRPVDPGSVGHAAALDWAGRGT 167
SS +G+L+ P+DPG GHA L GT
Sbjct: 284 SSNWGILNIPLDPGQRGHADVLVLVTAGT 312
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 0.82
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 244 TQNYFTQGIYFHHLVFKSVRSQQELSREE 330
T YFT YFH ++F+S R+ Q +SR E
Sbjct: 78 TLRYFTSAPYFHSILFQS-RAFQNMSRGE 105
>SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)
Length = 406
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 236 SSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
+S G G+C+ C + G H+C++QC
Sbjct: 309 NSMPGMLGRCYYCTSCQKGYDRKNHKCNNQC 339
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 87 PSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLP 215
P +EH P PP+T H V +VP P + + P P
Sbjct: 538 PVTEHSSVPCPPVTAQCHVPPVTEHDSVPCPPVTEHDSVPCPP 580
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 100 CSEDGDTQGRVPAVLAALTKSNQN*TQKINPT 5
CS GD +G P + LTKSN++ Q PT
Sbjct: 302 CSSRGDHRGVRPGGASTLTKSNESPEQGDTPT 333
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 236 SSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
+S G G+C+ C G + G H+C++ C
Sbjct: 318 NSMPGMLGRCYYCTGCQKGYDQKNHKCNNLC 348
>SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41)
Length = 134
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 82 YLRLPSTGAHQSHPLQGPTTLHWWLHR*MCPGRPNLEPPHAQHF 213
++ P G + H Q P H WLH M P+ PP + F
Sbjct: 58 FVEYPYAGRMEYHATQVPPEWHRWLHN-MTDDPPSKVPPVPRKF 100
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 236 SSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
+S G G+C+ C G + G H+C++ C
Sbjct: 386 NSMPGMLGRCYYCTGCQKGYDQKNHKCNNLC 416
>SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1133
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 236 SSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
+S G G+C+ C G + G H+C++ C
Sbjct: 274 NSMPGMLGRCYYCTGCQKGYDRKNHKCNNLC 304
>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 27.9 bits (59), Expect = 2.5
Identities = 22/83 (26%), Positives = 29/83 (34%)
Frame = +3
Query: 75 PWVSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR*RTPNAEL 254
P PS++ R +PP HP TS P Q A+ S R P
Sbjct: 759 PHTQPSAQSRSYGLPPQQPGSHPVFGTTSEQRGLPPQQPASHPVFGTTSEQRGLPPQQPA 818
Query: 255 FHPRHILSSSRF*KRPQSTRTQP 323
HP +S + PQ + P
Sbjct: 819 SHPVFGTTSEKRGLPPQQPASHP 841
>SB_56886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.5 bits (58), Expect = 3.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 209 CWACGGSRLGRPG 171
CW CGG + G PG
Sbjct: 24 CWFCGGRKTGNPG 36
>SB_8940| Best HMM Match : Toxin_23 (HMM E-Value=7.4)
Length = 356
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 236 SSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
+S G G+C+ C + G H+C++QC
Sbjct: 306 NSMLGMLGRCYYCTRCQKGYDRKNHKCNNQC 336
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 111 PIPPLTGAHHPTL-VATSMNVPRPAQSRAAACPTLP 215
PI P TG P +A + VP PA AAA P P
Sbjct: 156 PIAPATGGPPPPPPIAPAATVPAPAVPLAAASPPPP 191
>SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
Length = 306
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 272 YMPWVK*FCVRSSSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
Y+ +VK +S G G+C+ C + G H+C++ C
Sbjct: 189 YLYYVKGHFDYINSMPGMLGRCYYCTSCQKGYDRRNHKCNNLC 231
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +1
Query: 91 LPSTGAHQSHPLQGPTTLHWWLHR*MCPGRPN--LEPPHAQHFPDRPVDEELRTQ 249
+P+ HPL P LH P P + PPH P +PV ++ Q
Sbjct: 573 MPTHRVPPPHPLSAPYRLHHGTSCDAPPDMPRHGVPPPHPSSVPHQPVVKQAWVQ 627
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 172 PGRPNLEPPHAQHFPDRPVDEELR 243
PGRP EP H P RP E+ R
Sbjct: 406 PGRPPHEPGRLPHEPGRPPYEQRR 429
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 172 PGRPNLEPPHAQHFPDRPVDE 234
PGRP EP H P RP E
Sbjct: 378 PGRPPYEPGRPPHEPGRPPHE 398
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 26.6 bits (56), Expect = 5.8
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +3
Query: 48 NAASTAGTLPWVSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTG 227
N AS + T +SP+ +PPL+ HH + +SMN + + P +PGS
Sbjct: 189 NRASVSQTRTTISPTFPSENFDLPPLSHPHH-MMRPSSMNYMQ------RSSPQMPGSQQ 241
Query: 228 R*RTPNAELFHP 263
+ HP
Sbjct: 242 LVHNTPHQTMHP 253
>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1428
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Frame = -1
Query: 179 RPGHIHRCSHQ------CRVVG----PCKGWDWCAPVLGRRRYP 78
RP I+ C+ + C +VG P + W W +L RRR+P
Sbjct: 1069 RPWGINNCNMKELAGVVCHLVGATPSPPEDWPWQTMILNRRRFP 1112
>SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09)
Length = 924
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 224 GRSGKCWACGGSRLGRPGHIHRCSHQC 144
G G+C+ C + G H+C++QC
Sbjct: 3 GMLGRCYYCTSCQKGYDRTNHKCNNQC 29
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 172 PGRPNLEPPHAQHFPDRPVDEELR 243
PGRP EP H P RP E+ R
Sbjct: 172 PGRPPHEPGRLPHEPGRPPYEQRR 195
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 172 PGRPNLEPPHAQHFPDRPVDE 234
PGRP EP H P RP E
Sbjct: 144 PGRPPYEPGRPPHEPGRPPHE 164
>SB_26436| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
Length = 233
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 239 SSSSTGRSGKCWACGGSRLGRPGHIHRCSHQC 144
++S G G+C+ C + G H+C++ C
Sbjct: 144 TNSMPGMLGRCYYCTSCQKGYDRRNHKCNNLC 175
>SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)
Length = 676
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +1
Query: 118 HPLQGPTTLHWWLHR*MCPGR-PNLEPPHAQHF 213
HP P WWL R MC + E H HF
Sbjct: 159 HPGTSPKNRKWWLRRLMCYNPIISKETSHKIHF 191
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 61 QRVPSPGYLRLPSTGAHQSHPLQGPTTLH 147
QR GYLR+PS Q+H L+ LH
Sbjct: 1869 QRESHLGYLRVPSRLDDQAHSLKAHLPLH 1897
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 244 TQNYFTQGIYFHHLVFKS 297
T +F+ GIY HHL +K+
Sbjct: 192 TLGHFSSGIYIHHLGYKA 209
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 26.2 bits (55), Expect = 7.7
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 51 AASTAGTLPWVSPSSEHRCAPIPPLTGAHHPTLVATSMN-VPRPAQSRAAACPTLPGSTG 227
AA T+G P +S H+C+P P T A + P+P + A P P
Sbjct: 411 AAKTSG--PPAKSASNHKCSPAKPSTPASKDAAAKPPTSPAPKP-EDEATGPPNKPSYQA 467
Query: 228 R 230
R
Sbjct: 468 R 468
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,175,118
Number of Sequences: 59808
Number of extensions: 279447
Number of successful extensions: 880
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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