Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o08
         (353 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   0.48 
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   0.83 
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   1.5  
AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridg...    24   1.5  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   3.4  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         22   5.9  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         22   5.9  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    22   5.9  
AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           22   5.9  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
 Frame = +1

Query: 34   DYFLLTLQVQRVPSPGYLRLPSTGAHQSHP--LQGPTTLHWWL-------HR*MCPGRPN 186
            DY + T Q Q   +PGY+ L    A   +P  L G T     L       H    P  PN
Sbjct: 1219 DYLMPTCQSQNQSTPGYMDLIGVPASVDNPEYLMGSTQAIAGLAQGSMGPHTPPPPNTPN 1278

Query: 187  LEPPHAQH--FPDRPVDEELRT-QNYFTQ 264
              P H QH     +P+ + L+T Q+ + Q
Sbjct: 1279 GMPTH-QHSQIQLQPIQQPLQTLQHQYQQ 1306


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = -1

Query: 227 TGRSGKCWACGGSRLGRPGHIHRCSHQ--CRVVGPCKGWDWCAPVLGRRRYPGEGTRCTC 54
           TG  G C  CG +R G   +  RC      R  G C     C PV  R        RC C
Sbjct: 361 TGHGGHCIDCGANRDG--PNCERCKENFFMREDGYCINCG-CDPVGSRSLQCNAEGRCQC 417


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 48  NAASTAGTLPWVSP-SSEHRCAPIPPLTGAHH 140
           NA   AGTL  V P SSE   + +PP     H
Sbjct: 741 NAPKVAGTLGAVQPSSSEAVSSKLPPTAEPEH 772


>AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridging
           factor-like proteinprotein.
          Length = 147

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 NTSRIDRSMKNSERRTISPKAYTFIISFLKASAVNKNSAARKL 334
           NT+++DR       +T++P     I+   +A  +++   A ++
Sbjct: 57  NTAKLDRETDELRHKTLAPSVAKLIMQGRQAKGLSQKDLATQI 99


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 226 PVDPGSVGHAAALDWAGRG 170
           P +PGSV     LD AG+G
Sbjct: 468 PGEPGSVRPICLLDGAGKG 486


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 76  PGYLRLPSTGAHQSHPLQGPT 138
           P + +LP    HQ HP Q P+
Sbjct: 98  PHHHQLPHHPHHQHHPQQQPS 118


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 76  PGYLRLPSTGAHQSHPLQGPT 138
           P + +LP    HQ HP Q P+
Sbjct: 98  PHHHQLPHHPHHQHHPQQQPS 118


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +1

Query: 88  RLPSTGAHQSHPLQGPTTLHWWLHR*MCPGRPNLEPPHAQHFPDRPVDEELRTQN 252
           R P+T     +  + PTT H    R   P  P        H    PV++ L   N
Sbjct: 308 RTPATSTEHRYTTRTPTTTHRLAARTSTPPDPETTSSQQCH---PPVNDTLEAPN 359


>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 236 SSSTGRSGKCWAC 198
           S +TG SG C AC
Sbjct: 71  SKTTGNSGNCIAC 83


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,433
Number of Sequences: 2352
Number of extensions: 9168
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25794900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)