Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o06
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 31 0.15
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.4
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 3.1
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.5
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 5.5
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 5.5
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 26 5.5
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 7.3
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 25 7.3
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 25 7.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.6
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 9.6
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 31.1 bits (67), Expect = 0.15
Identities = 22/91 (24%), Positives = 46/91 (50%)
Frame = -1
Query: 462 PVFLNDYPDFVVPYMGRLLNKSYTNFQTFNVLYPKDSTLQERREKVLRKLMEPNFKHHLY 283
P +L D + ++ ++LN S + F++ P + L++ +++ + L N K+ L+
Sbjct: 1322 PQYLLDSREKERKFLEQMLNPS--KVEAFSIPVPISADLRKYQQEGVNWLAFLN-KYELH 1378
Query: 282 GFMCKDFPLYWRIATSIILKKNNANSRKQLE 190
G +C D L + T I+ ++ N +K E
Sbjct: 1379 GILCDDMGLGKTLQTICIVASDHYNRQKLFE 1409
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 228 LKKNNANSRK-QLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYND 76
L+K N ++ K Q +L+++ KKW+N + + + D+ L+L+ND
Sbjct: 2579 LQKFNLDANKFQFTSLLDI-KKWLNLGPSEKLFSSLFSIYVDNDIPLKLFND 2629
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -1
Query: 249 RIATSIILKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLA 70
R++ S+I K+N +L+ V T+ + H + DF + + Y D+
Sbjct: 2076 RVSFSVIYTKHND---LRLQETVHSTRAFFEDLDTHADTLTFDFPRVVFSTDSSQYYDIF 2132
Query: 69 YALNELRKLIDENQREKNQR 10
+ +L + Q+++NQR
Sbjct: 2133 TIITDLLLYKEPAQKQRNQR 2152
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -1
Query: 120 FLNIQEDLNLELYNDLAYALNELRKLIDEN 31
F ++ E ++L+ LAY ++ELR +++EN
Sbjct: 307 FTHVTEISFVKLFEFLAYEMDELRLIMEEN 336
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 494 KKFSSLNASWIFLKT 538
KK+ SLN +W FLKT
Sbjct: 15 KKYDSLNGTWDFLKT 29
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 246 IATSIILKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELY 82
IATS + ++ SRK +EA +E+ + M+ F IQ+D N+ +Y
Sbjct: 87 IATSYTILRSWLLSRKHIEAWIELA----------IRRMFYSFCAIQDDSNISIY 131
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 117 LNIQEDLNLELYNDLAYALNELRKLIDENQREKNQ 13
L IQ+DL E + L L E+RK NQ KNQ
Sbjct: 96 LKIQKDLVKETHARLEQRLEEIRK---RNQSRKNQ 127
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 219 NNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAY 67
N+ S + L +KK + K KE+Y+ LN + + EL +L+Y
Sbjct: 572 NSDESGRNRTFLNRSSKKRAENSLKSKKELYLKNLNQRYQIAHELEQELSY 622
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 257 KGKSLHINPYK*CLKFGSINFLRTFSLRSCSVES 358
K + L + P K CL FG +T R+C+ +S
Sbjct: 210 KFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -1
Query: 240 TSIILKKNNANSRKQLEALVEVTKKWINKN-----QKHNKEMYIDFLNIQEDLNLELYND 76
T++ L N + L+ LV + K W+ KN + K + L+IQ + + + +
Sbjct: 151 TNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSN-RITQFEN 209
Query: 75 LAYALNELRKL 43
LA + LR+L
Sbjct: 210 LACLSHCLREL 220
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 534 FKNIQDAFNDENFLDYL 484
FK I +FN E+FL YL
Sbjct: 273 FKEIDPSFNTEHFLQYL 289
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -1
Query: 561 LEMLFNDDVFKNIQDAFNDENFLDYLEINN----LQQPVFLNDYPD 436
LE L D F+ ++ E FLDYL +NN P + D PD
Sbjct: 105 LERLAESDDFEAVKSI--QEFFLDYLVVNNDLASFNIPHIIEDSPD 148
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 540 DVFKNIQDAFNDENFLDYLEINNLQQ 463
+VF ++ +AF+DEN D IN+ ++
Sbjct: 1450 EVFNDLNEAFDDENSEDENGINDTKE 1475
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 447 DYPDFVVPYMGRLL 406
DYPDFV+P G L+
Sbjct: 177 DYPDFVIPKTGYLV 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,657
Number of Sequences: 5004
Number of extensions: 55021
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -