Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o06
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0718 - 26592786-26593856,26597401-26597451,26597977-265984... 33 0.26
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 29 2.5
04_01_0078 - 879016-881288,884676-885141 29 3.3
12_02_0044 - 12807372-12807555,12807782-12807840,12807943-128080... 29 4.3
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751... 29 4.3
06_02_0162 + 12466027-12466354,12466894-12467546 29 4.3
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 28 5.7
10_08_0897 - 21419639-21420633,21420826-21421153 28 5.7
10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175 28 5.7
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538 28 5.7
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 28 5.7
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 28 5.7
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 28 7.5
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 28 7.5
12_01_0910 + 8858443-8859414 27 9.9
09_04_0017 + 13821348-13823404,13823546-13823819,13823916-138242... 27 9.9
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 27 9.9
04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798 27 9.9
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 27 9.9
>11_06_0718 -
26592786-26593856,26597401-26597451,26597977-26598423,
26599748-26599815,26599965-26600052
Length = 574
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -1
Query: 228 LKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYND 76
L +N+A+SRK+LE LV+ K N + + + ++ +NIQ N YN+
Sbjct: 166 LTRNSADSRKKLENLVDKLKASGNTDFRPALKKAVEDMNIQNIKNSSAYNN 216
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALN---ELRKLIDENQREKNQR 10
EV +K + ++ + + + NI+E+ N E YND +L+ E K++ E EKN
Sbjct: 339 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEEGESAKVLWEQWVEKNPN 398
Query: 9 RH 4
+
Sbjct: 399 NY 400
>04_01_0078 - 879016-881288,884676-885141
Length = 912
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 186 LVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNELRKL 43
L T W+++ +H + FL ++E NLE ++A +LRKL
Sbjct: 608 LGRTTPSWLSR--EHGGVSNLQFLELRECYNLETLPEIAKLFTDLRKL 653
>12_02_0044 -
12807372-12807555,12807782-12807840,12807943-12808072,
12808160-12808224,12808318-12808506,12808574-12809119,
12809258-12809497,12809598-12810032
Length = 615
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 495 LDYLEINNLQQPVFLNDYPDFVVPYMGRLLNKSYTNFQTFNVLYPK 358
L YL + ++PV + DYP + P+ R L + F+++ PK
Sbjct: 491 LSYLADDLYKKPVIIYDYPKQLKPFYAR-LKEDLKTVSAFDLVVPK 535
>08_02_0775 +
21070898-21071290,21071406-21071504,21075103-21075126,
21076344-21076391,21076536-21076788,21076945-21077055,
21077544-21077680,21077778-21077891,21077982-21078181,
21078268-21078516,21078730-21078886
Length = 594
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 511 ECILDIFKNVIIKQHFKYDRRQSRNAYS 594
EC+L F+ + + HFKY++ + YS
Sbjct: 277 ECLLTRFQEMSLDYHFKYEQEAGSSVYS 304
>06_02_0162 + 12466027-12466354,12466894-12467546
Length = 326
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNEL 52
EV +K + ++ + + + NI+E+ N E YND +L+E+
Sbjct: 223 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEV 265
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNE 55
EV +K + ++ + + + NI+E+ N E YND +L+E
Sbjct: 191 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDE 232
>10_08_0897 - 21419639-21420633,21420826-21421153
Length = 440
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNE 55
EV +K + ++ + + + NI+E+ N E YND +L+E
Sbjct: 339 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDE 380
>10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175
Length = 458
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNE 55
EV +K + ++ + + + NI+E+ N E YND +L+E
Sbjct: 191 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDE 232
>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
Length = 327
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNE 55
EV +K + ++ + + + NI+E+ N E YND +L+E
Sbjct: 208 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDE 249
>09_01_0073 -
1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNE 55
EV +K + ++ + + + NI+E+ N E YND +L+E
Sbjct: 191 EVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDE 232
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -1
Query: 582 TRLTSVILEMLFNDDVFKNIQDAFNDENFLDYLEINNLQQPVFLNDYPDF---VVPYMGR 412
T +V + +D V K+I D+ D + NL + + LND PDF ++ +G
Sbjct: 93 TSANAVAVGKSSDDKVKKDISKKDVDDQIADTQILKNLGKYLLLNDSPDFRFRLILSLGL 152
Query: 411 LLNKSYTNFQ 382
L+ N Q
Sbjct: 153 LVGAKVINVQ 162
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 360 KDSTLQERREKVLRKLME-PNFKHHLYGFMCKDFPLYWRIATSIILKKNNANSRKQLEAL 184
KD+ L R +L+ + +F + L W IAT + ++++ A K+L
Sbjct: 428 KDTDLNSRGSFILKSMKAYDDFARWSVNIDFDESILVWHIATELYIRRSKARHAKELVEA 487
Query: 183 VEVTKKWI 160
EV ++
Sbjct: 488 TEVLSNYM 495
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 228 LKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLEL 85
L+K + K+ E+L + + + K +K ++ +DF +EDL E+
Sbjct: 302 LRKKHEELTKRYESLTKKRNEDLAKLRKEKEDQQVDFKKEKEDLEREI 349
>12_01_0910 + 8858443-8859414
Length = 323
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 433 CSALHGKIIEQELHEFSNIQCFIP 362
C ALHG++ + +EF+N F+P
Sbjct: 283 CRALHGELTGEIYNEFANSYVFLP 306
>09_04_0017 +
13821348-13823404,13823546-13823819,13823916-13824238,
13824491-13824604,13825357-13825422,13825638-13825764
Length = 986
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 262 KIFAHKSVQMMFE----IWFH*FS*DFLPTFLQRRIFRV 366
KIFA K ++++ +W H + LPTFL++R RV
Sbjct: 206 KIFADKILEVISPDEDYVWVHDYHLMILPTFLRKRFNRV 244
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 651 HDKVNLSLYDRETKIIHXQTICITRLTSVILEMLFND 541
HD + L +YD +T CI LT V++E + D
Sbjct: 503 HDMLMLEVYDHDTFSRDYMGRCILTLTKVLIEEDYKD 539
>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
Length = 575
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 180 EVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNEL 52
EV ++ + ++ + + + NI+E+ N E YND +L+E+
Sbjct: 92 EVNERLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEV 134
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 162 INKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNEL 52
++ N +E +++FL + + L L+N+L AL+ L
Sbjct: 451 LSSNIPRVEEFFLEFLKVDDTSGLGLFNELMKALDSL 487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,664
Number of Sequences: 37544
Number of extensions: 271529
Number of successful extensions: 733
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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