Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o06
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    26   0.91 
EF588439-1|ABQ96675.1|  177|Anopheles gambiae transposase protein.     24   4.9  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   8.5  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 26.2 bits (55), Expect = 0.91
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +3

Query: 408 IIFPC---KALQS-PDNHSEIRVAVNCLSLDNLKSF 503
           +I PC   K +++ PDN  E++ A+N +  +N  +F
Sbjct: 316 VIVPCFQDKMVRATPDNVKEVKTAINAVECENTANF 351


>EF588439-1|ABQ96675.1|  177|Anopheles gambiae transposase protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -1

Query: 399 SYTNFQTFNVLYPKDSTLQERREKVLRKLMEPNFKHHLYGFMCKDFPLYWRIATSIILKK 220
           S  NFQ  N  +  + ++Q   +K +    +      L G +CK+  L + +  S I KK
Sbjct: 75  SAVNFQPSNQYFNSNMSIQGYLKKPINSETKKVLDRMLLGLICKEC-LPFNLVESEIFKK 133


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 561  LEMLFNDDVFKNIQDAFNDENFLDYLEINN 472
            LE+ F DD  K + D +    F D    NN
Sbjct: 1801 LEISFRDDDIKIVFDGYRARFFADQSYFNN 1830


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,875
Number of Sequences: 2352
Number of extensions: 13210
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)