Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o06
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    31   0.54 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    31   0.54 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    31   0.54 
Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical pr...    31   0.95 
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormo...    29   2.2  
Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin monoox...    29   2.9  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    28   6.7  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -1

Query: 228  LKKNNANSRKQLEALVEVTKKW---INKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALN 58
            L+KN A +  +L+ L +    +   IN  ++HN E+       Q  +   L N+L     
Sbjct: 800  LEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIKGHQGKIT-HLENELHSRSG 858

Query: 57   ELRKLIDENQREKNQRR 7
            E+ KL D NQR + +++
Sbjct: 859  EIEKLNDLNQRLQKEKQ 875


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -1

Query: 228  LKKNNANSRKQLEALVEVTKKW---INKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALN 58
            L+KN A +  +L+ L +    +   IN  ++HN E+       Q  +   L N+L     
Sbjct: 873  LEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIKGHQGKIT-HLENELHSRSG 931

Query: 57   ELRKLIDENQREKNQRR 7
            E+ KL D NQR + +++
Sbjct: 932  EIEKLNDLNQRLQKEKQ 948


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -1

Query: 228  LKKNNANSRKQLEALVEVTKKW---INKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALN 58
            L+KN A +  +L+ L +    +   IN  ++HN E+       Q  +   L N+L     
Sbjct: 873  LEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIKGHQGKIT-HLENELHSRSG 931

Query: 57   ELRKLIDENQREKNQRR 7
            E+ KL D NQR + +++
Sbjct: 932  EIEKLNDLNQRLQKEKQ 948


>Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical
           protein H03G16.4 protein.
          Length = 383

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -1

Query: 552 LFNDDVFKNIQDAFNDENFLDYLEINNLQQPVFLNDYPDFVVPYMGRLLNKSYTNFQTFN 373
           L + D  K+I   F+DE  L+Y E  NL    + N    ++  Y   L  + Y N   F 
Sbjct: 235 LCSADQLKHIDLHFHDEELLEYNEFVNLNH--WKN--AKYLKLYCKYLPTRFYQNLSNFK 290

Query: 372 VLYPK-DSTLQERREKVLRKLMEPN 301
           VL  + D +  E  +++ + + EPN
Sbjct: 291 VLSLRPDQSSVEDIDQIKKLISEPN 315


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 294 HHLYGFMCKDFPLYWRIA 241
           HHL G  C+D P++W IA
Sbjct: 611 HHLTGVTCEDSPIWWSIA 628


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = -1

Query: 633  SLYDRETKIIHXQTICITRLTSVILEMLFNDDVFKNIQDAFNDENFL-DYLEINNLQQPV 457
            +L+DRE  +IH + +       + L+ +     FK       + N+L  Y+E+N   +  
Sbjct: 1301 TLFDREKYVIHYENLLQCLQLGLKLKKIHRIITFK-------ESNWLASYIEMNTNPRKN 1353

Query: 456  FLNDYP-DFVVPYMGRLLNKSYTNFQTFNVLYPKDSTLQERREKVLRKLMEPNFKHHL 286
              ND+  DF      +L+N S       NV    D  L    +K+ +   +PNFK  +
Sbjct: 1354 AKNDFEKDFY-----KLMNNSVFGKTMENVRERVDVRLVTDEDKIKKLASKPNFKRRI 1406


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 225 KKNNANSRKQLEALVEVTKKWINKNQKHNKEMYID--FLNIQEDLNL 91
           K ++ + ++     + V+KKW   N++ +K  Y+D   + I EDL +
Sbjct: 82  KSSSKHGKRMTSRAIHVSKKWSQFNRREDKTDYLDDETMQILEDLKI 128


>AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 133 protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
 Frame = -1

Query: 288 LYGFMCKDFPLYWRIATSIILKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNI 109
           L GF+  D   YWR A S +++ +  N       +         K Q H  E     L I
Sbjct: 282 LRGFLVPDIEKYWRHALSDLVELDPTNVELNFMLIQLCLNSAGQKYQGHVLEATEKILQI 341

Query: 108 QED---------LNLELYNDLAYALNELRKLIDENQREKNQRRH 4
           Q D         L L  Y+     L ++ + I+ + R++ ++ H
Sbjct: 342 QSDNMHEYYTKKLKLVNYSGRLARLMKINRAIEADVRDRKEKNH 385


>Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical
           protein K08C7.2 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -1

Query: 237 SIILKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALN 58
           S ++K    N+ K++ A  +   +    N  HN EMY   LN  +   LE +    + +N
Sbjct: 54  SSVMKTTVINTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYELEKHIKFNHKVN 113

Query: 57  ELRKLIDENQREKNQRRHT 1
            + +  D  +  K +  +T
Sbjct: 114 SIDRNEDYEKTGKWKVNYT 132


>AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -1

Query: 237 SIILKKNNANSRKQLEALVEVTKKWINKNQKHNKEMYIDFLNIQEDLNLELYNDLAYALN 58
           S ++K    N+ K++ A  +   +    N  HN EMY   LN  +   LE +    + +N
Sbjct: 54  SSVMKTTVINTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYELEKHIKFNHKVN 113

Query: 57  ELRKLIDENQREKNQRRHT 1
            + +  D  +  K +  +T
Sbjct: 114 SIDRNEDYEKTGKWKVNYT 132


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -1

Query: 222 KNNANSRKQLEALVEVTKKWIN----KNQKHNKEMYIDFLNIQEDLNLELYNDLAYALNE 55
           K + N   ++   V   +K ++    +N++  KEM  D    QE+LN+ L ND     + 
Sbjct: 455 KTSQNKENKMRKKVSELEKKLDVENVQNEQEVKEMEDDLRGKQEELNI-LRNDSLKVHDV 513

Query: 54  LRKLIDENQREKNQRRH 4
           L ++ D  Q+     +H
Sbjct: 514 LMEIADLKQKHSKLEKH 530


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 501 NFLDYLEINNLQQPVFLNDYPDFVVPYMGRLLNKSYTNFQTFNVLYPKDSTLQ 343
           N LD L+I + + P + ++   +V+ + GR+   S  NFQ  +   P+   +Q
Sbjct: 337 NDLDSLKILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYIVMQ 389


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 501 NFLDYLEINNLQQPVFLNDYPDFVVPYMGRLLNKSYTNFQTFNVLYPKDSTLQ 343
           N LD L+I + + P + ++   +V+ + GR+   S  NFQ  +   P+   +Q
Sbjct: 337 NDLDSLKILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYIVMQ 389


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 255 YWRIATSIILKKNNANSRKQLEALVEVTKKWINKNQKHNKE 133
           YW+I  +  LKK   N  + L AL++  ++   K  K  KE
Sbjct: 462 YWQIDPADALKKEKVNYGEDLVALIKEVEQSKEKEPKVKKE 502


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 255 YWRIATSIILKKNNANSRKQLEALVEVTKKWINKNQKHNKE 133
           YW+I  +  LKK   N  + L AL++  ++   K  K  KE
Sbjct: 462 YWQIDPADALKKEKVNYGEDLVALIKEVEQSKEKEPKVKKE 502


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = -2

Query: 404 TRATRIFKHSMFYTRKIRRCRNVGRKS*EN*WNQISNIICTDLCAKIFLYIGESQR 237
           T+ TR+F      T  IR       KS  N +  +   IC   C+    Y G S R
Sbjct: 677 TKYTRVFARRESRTEDIRSSAKARPKSCRNCFKTVRACICKRKCSSNTRYFGSSFR 732


>U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical
           protein T23B3.1 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -1

Query: 543 DDVFKNIQDAF--NDENFLDYLEINNLQQPVFLNDYPDFVVPYMGRLLNKSYTNFQTFNV 370
           + +F+NI +AF   D N L      N    +FL+    F+  Y  R    +      +  
Sbjct: 25  ESLFQNIVNAFLKQDGNHLRDKAAKNKSLRIFLSSQR-FLTEYAKRTGRMTCLPPAEYLE 83

Query: 369 LYPKDSTLQERREKVLRKLMEPNFKHHLYGFMCKDFPL 256
              +D  L  RR K    L E  F    +GF+  DFP+
Sbjct: 84  KQMRDGFLPFRRHKNRFDLQEIVFDKTRHGFLQIDFPI 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,959,776
Number of Sequences: 27780
Number of extensions: 294249
Number of successful extensions: 898
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)