Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o06
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.6  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 521 WIFLKTSSLNSISSMTDVNLVMHIVXMCI---IFVSRS*XDKFTL 646
           WIF    SL + S+M  VNL +    M I   IF+  S    F L
Sbjct: 71  WIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFIYNSFNTGFAL 115


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/36 (25%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 201 KQLEALVEVTKKWINKN---QKHNKEMYIDFLNIQE 103
           K+ + +  ++ K I+ N   + +NK++Y + +NI++
Sbjct: 310 KESKIISSLSNKTIHNNNNYKNYNKKLYYNIINIEQ 345


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 479 ISR*SKKFSSLNASWIFLKTSSLNSISSMTDVNLVMHIVXMCIIFVSRS*XD 634
           IS     FS  N    FL+T    S  +   V L+ H   M +IF+  S  D
Sbjct: 128 ISSRDSAFSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDTD 179


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 153 NQKHNKEMYIDFLNIQE 103
           N  +NK++Y + +NI++
Sbjct: 105 NNNYNKKLYYNIINIEQ 121


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 153 NQKHNKEMYIDFLNIQE 103
           N  +NK++Y + +NI++
Sbjct: 105 NNNYNKKLYYNIINIEQ 121


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 153 NQKHNKEMYIDFLNIQE 103
           N  +NK++Y + +NI++
Sbjct: 325 NNNYNKKLYYNIINIEQ 341


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 391 EFSNIQCFIP 362
           EF+N+QC +P
Sbjct: 599 EFANLQCIVP 608


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 521 WIFLKTSSLNSISSMTDVNLVM 586
           +IFL T SL + S++  +NL +
Sbjct: 75  YIFLSTKSLRTPSNLFVINLAI 96


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 521 WIFLKTSSLNSISSMTDVNLVM 586
           +IFL T SL + S++  +NL +
Sbjct: 41  YIFLSTKSLRTPSNLFVINLAI 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,562
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)