Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14o04
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   1.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   2.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   4.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    24   4.0  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   4.0  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    24   4.0  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   4.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    24   5.3  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    24   5.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    23   9.3  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    23   9.3  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 14  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 193
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -1

Query: 222 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 100
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
 Frame = -1

Query: 294 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASR 115
           +++   GK+   V P  +      DF + +S S+    ++S  G  R            R
Sbjct: 308 STVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGR 360

Query: 114 LRRSGYNSVRC-RGSE*SVDDFRSWRGVVLGR 22
            R +G NS  C    +  V + R  RG   GR
Sbjct: 361 CRDAGLNSEDCISDDDMPVSNARKPRGRGRGR 392


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 220 LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 119
           LY  +F    R  ATS  I + EID  G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 39  PARNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIAS 152
           P+ NG R++   SP  E+++     AVM  +RK+ + +
Sbjct: 186 PSENG-RIRVSMSPQNEINFTPENPAVMEKIRKRGVCN 222


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 8   QXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 154
           + D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 354 EDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 155 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 283
           L  P+G R  VS    + +++K+ C   P SRG TV    PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -3

Query: 199 FKTRDATSKPIWIAEIDAIGFFLN 128
           ++T++  +  IW+  I  +G++ N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 172 PIWIAEIDAIGFFLNTCITAP 110
           P W+AE+ AI  F++  + AP
Sbjct: 43  PFWLAEVLAINSFVSIHMPAP 63


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 143 DSIDLRDPNGLRRRVSRFECETRLV 217
           DS+ L   NGL +R  R   ET+ +
Sbjct: 345 DSVPLEKINGLEQRALRLLAETKQI 369


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 29  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 157
           S    +E   ST+YS P    E  PD   + + V+ K    +L
Sbjct: 243 SNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNKHTNL 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,637
Number of Sequences: 5004
Number of extensions: 21879
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)