Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o04
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.053
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.21
07_03_0846 - 21983581-21986055 28 1.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 2.0
01_06_0695 - 31292622-31293317 27 2.0
10_08_0113 - 14896341-14897153 27 2.6
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 2.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 2.6
01_05_0118 + 18335065-18335553 27 2.6
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 2.6
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 26 4.6
01_01_0785 - 6076089-6077615 26 4.6
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 26 6.1
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 25 8.0
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 25 8.0
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 25 8.0
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 25 8.0
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547... 25 8.0
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51... 25 8.0
01_01_0098 + 744582-745380,746107-746130,746500-747569 25 8.0
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.053
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 26 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 154
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 294 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 160
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 152 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 289
DL+D G +R +C+T S PD S VS+ LPD+A+
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQ 369
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 275 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 171
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_06_0695 - 31292622-31293317
Length = 231
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 8 QXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 112
Q D PS++ SST S P HR L P R
Sbjct: 13 QQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -3
Query: 94 LSSMSGLGIVCRRL----PFLAGCCAR 26
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 243 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 145
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/84 (26%), Positives = 28/84 (33%)
Frame = +2
Query: 2 RSQXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRR 181
RS+ A R +S D P HR P R R K D R P+ +
Sbjct: 502 RSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPAK 561
Query: 182 RVSRFECETRLVKSHCLEPPDSRG 253
+ S R S P S+G
Sbjct: 562 KGSSKYNRRRSSSSRSSSPAGSKG 585
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 285 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 157
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR 181
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECET 208
+ +PR S +D S P H ++ + D VKK + +L D G E E
Sbjct: 591 AASPRLTSISDSDGSYPVHAAAMFGRTKIIDELVKKCPNYYELVDDKGRNLLHIAVESEQ 650
Query: 209 RLVKSH 226
+V H
Sbjct: 651 EMVVRH 656
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 275 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 168
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSR 118
S +PR+ R S YS R R+ Y RSR
Sbjct: 155 SPSPRRGRGRSRSYSRSRSRSRSYSRSRSR 184
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 119 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARL 292
D KKK S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDL 311
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 185 VSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 286
+ F+C R ++ ++RG T+ PDSA
Sbjct: 340 IGEFQCYDRYLQKSLRRAAEARGHTIWARAPDSA 373
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 119 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARL 292
D KKK S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDL 311
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 25.4 bits (53), Expect = 8.0
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 80 RHRTELY-PDLRSRDARVKKKTDSIDLR-DPNG-LRRRVSRFECETRLVKSHCLEPPDSR 250
R R E+ DLR R R + S+ + + NG RRR R+ +SH SR
Sbjct: 383 RDRVEMDGSDLRHRLRRRRINESSLAISPERNGEQRRRDERYRERAHGHRSHRDHHQSSR 442
Query: 251 GSTVSISLPDSARL 292
GST+S L +L
Sbjct: 443 GSTLSSRLQGRIKL 456
>04_03_0242 +
13253268-13253317,13254522-13254573,13254654-13254730,
13254804-13254937,13255645-13255815,13255894-13256035,
13256257-13256443,13256932-13256998,13257846-13257892,
13258623-13258629,13258716-13258786,13259229-13259339,
13260404-13260466,13261050-13261187,13261721-13261826,
13262101-13262147,13262416-13262460,13262538-13262604,
13262683-13262737,13263008-13263214,13264723-13264810,
13264940-13265021,13265274-13265320,13265782-13265941,
13266058-13266224,13266360-13266659,13267144-13267200
Length = 914
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 59 STDYSEPRHRTELYPDLR 112
STD+ +PR RTE+ ++R
Sbjct: 583 STDHKQPRERTEMNANIR 600
>02_01_0074 +
519401-519512,519513-519548,519647-519706,519785-519877,
519968-520033,520146-520223,520300-520407,520478-520554,
520632-520706,520792-520799,520981-521098,521199-521625,
521627-521661
Length = 430
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 50 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 154
+KSST S + + + DLR RD ++KKT S D
Sbjct: 89 KKSSTRSSTAQ--SGILKDLRERDKNIEKKTISKD 121
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 266 CSLWSPESREALNNVTLLVAFRIQN 192
C W+P +R ++ V ++ R+QN
Sbjct: 589 CIQWNPRNRPSMTKVVNMITGRLQN 613
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,723
Number of Sequences: 37544
Number of extensions: 164738
Number of successful extensions: 550
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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