Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o04
(294 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF332228-1|AAK13480.1| 230|Homo sapiens melanoma-associated cho... 29 2.7
L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein. 28 4.7
BX649194-1|CAE46213.1| 298|Homo sapiens hypothetical protein pr... 28 4.7
AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or mix... 28 4.7
AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or mix... 28 4.7
BC117276-1|AAI17277.1| 420|Homo sapiens reticulon 4 receptor-li... 28 6.2
BC113673-1|AAI13674.1| 420|Homo sapiens reticulon 4 receptor-li... 28 6.2
AY250221-1|AAP82838.1| 420|Homo sapiens nogo receptor-like 3 pr... 28 6.2
AF532858-1|AAP21835.1| 420|Homo sapiens Nogo-66 receptor homolo... 28 6.2
BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or mix... 27 8.2
>AF332228-1|AAK13480.1| 230|Homo sapiens melanoma-associated
chondroitin sulfate proteoglycan-like protein.
Length = 230
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 157 PRSKWASTSRLAF*MRNATSKVTLFRASRLSGLHSEHILAGFG*AG 294
P S WA TS A MR+ T+ T S S+H L G AG
Sbjct: 107 PSSTWAPTSTSAVGMRSTTTSQTALAGDSCSRPLSQHSLRPEGPAG 152
>L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein.
Length = 568
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 5 SQXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 184
S ++ S++ SST +S+P + + + S+D+R K RD N +
Sbjct: 172 SSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKE 231
Query: 185 VSRFECETRLVKSHCLEP 238
S+ E + +K + P
Sbjct: 232 SSKKPKENKPLKEEKIVP 249
>BX649194-1|CAE46213.1| 298|Homo sapiens hypothetical protein
protein.
Length = 298
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 5 SQXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 184
S ++ S++ SST +S+P + + + S+D+R K RD N +
Sbjct: 172 SSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKE 231
Query: 185 VSRFECETRLVKSHCLEP 238
S+ E + +K + P
Sbjct: 232 SSKKPKENKPLKEEKIVP 249
>AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 5 SQXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 184
S ++ S++ SST +S+P + + + S+D+R K RD N +
Sbjct: 172 SSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKE 231
Query: 185 VSRFECETRLVKSHCLEP 238
S+ E + +K + P
Sbjct: 232 SSKKPKENKPLKEEKIVP 249
>AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 5 SQXDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 184
S ++ S++ SST +S+P + + + S+D+R K RD N +
Sbjct: 172 SSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKE 231
Query: 185 VSRFECETRLVKSHCLEP 238
S+ E + +K + P
Sbjct: 232 SSKKPKENKPLKEEKIVP 249
>BC117276-1|AAI17277.1| 420|Homo sapiens reticulon 4 receptor-like
2 protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 77 PRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGS 256
P + LY DL + D+R ++ D+ D G + E + C PPDSRG
Sbjct: 341 PADPSTLYRDLPAEDSRGRQGGDAPTEDDYWGGYGGEDQ-RGEQMCPGAACQAPPDSRGP 399
Query: 257 TVSISLP 277
+S LP
Sbjct: 400 ALSAGLP 406
>BC113673-1|AAI13674.1| 420|Homo sapiens reticulon 4 receptor-like
2 protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 77 PRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGS 256
P + LY DL + D+R ++ D+ D G + E + C PPDSRG
Sbjct: 341 PADPSTLYRDLPAEDSRGRQGGDAPTEDDYWGGYGGEDQ-RGEQMCPGAACQAPPDSRGP 399
Query: 257 TVSISLP 277
+S LP
Sbjct: 400 ALSAGLP 406
>AY250221-1|AAP82838.1| 420|Homo sapiens nogo receptor-like 3
protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 77 PRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGS 256
P + LY DL + D+R ++ D+ D G + E + C PPDSRG
Sbjct: 341 PADPSTLYRDLPAEDSRGRQGGDAPTEDDYWGGYGGEDQ-RGEQMCPGAACQAPPDSRGP 399
Query: 257 TVSISLP 277
+S LP
Sbjct: 400 ALSAGLP 406
>AF532858-1|AAP21835.1| 420|Homo sapiens Nogo-66 receptor homolog-1
protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 77 PRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGS 256
P + LY DL + D+R ++ D+ D G + E + C PPDSRG
Sbjct: 341 PADPSTLYRDLPAEDSRGRQGGDAPTEDDYWGGYGGEDQ-RGEQMCPGAACQAPPDSRGP 399
Query: 257 TVSISLP 277
+S LP
Sbjct: 400 ALSAGLP 406
>BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECET 208
S++ SST +S+P + + + S+D+R K RD N + S+ E
Sbjct: 180 SSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKEN 239
Query: 209 RLVKSHCLEP 238
+ +K + P
Sbjct: 240 KPLKEEKIVP 249
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,180,932
Number of Sequences: 237096
Number of extensions: 823509
Number of successful extensions: 2694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2687
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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