Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o04
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical pr... 27 1.8
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 1.8
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 2.3
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 27 2.3
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 27 2.3
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 27 2.3
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 27 2.3
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 3.1
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr... 26 4.1
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein. 26 4.1
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 26 4.1
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 26 4.1
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 26 4.1
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 26 4.1
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 26 4.1
Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical pr... 26 5.4
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 26 5.4
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 26 5.4
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 26 5.4
AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical... 26 5.4
AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 26 5.4
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 26 5.4
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 26 5.4
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 25 7.1
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 25 7.1
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical... 25 7.1
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical... 25 7.1
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 25 7.1
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 25 9.4
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 25 9.4
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 25 9.4
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-... 25 9.4
U23514-1|AAC46543.1| 817|Caenorhabditis elegans Hypothetical pr... 25 9.4
U22832-2|AAA64509.2| 571|Caenorhabditis elegans Hypothetical pr... 25 9.4
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 25 9.4
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 25 9.4
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 25 9.4
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 25 9.4
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 25 9.4
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 25 9.4
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 25 9.4
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 25 9.4
>U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical
protein F18E3.11 protein.
Length = 90
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 190
STT RKSST PRH + + ++ + S L D N L+R+ S
Sbjct: 30 STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 171 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWR 40
P R+ +LS FF ++ SR+RRS + R D SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 96 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 203
YIRT +VLRKKP S+ D +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 31 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 195
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 31 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 195
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 31 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 195
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 31 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 195
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 227 NVTLLVAFR-IQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQF 87
N L+AF + A+ D EAHL+ +RC R H G +I QF
Sbjct: 1134 NEKFLLAFALVLRAKYDHEAHLNLVNRCMRNVC-KTHFGETVDEIFQF 1180
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 224 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 84
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 224 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 84
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
C25G4.5 protein.
Length = 1263
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = +2
Query: 41 RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVK 220
R KS+ D +E PD ++ D R + + N R+V C T L
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133
Query: 221 SHCLEPPDSRGSTV 262
S L P G TV
Sbjct: 1134 SLALSMPSRMGETV 1147
>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
Length = 1263
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = +2
Query: 41 RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVK 220
R KS+ D +E PD ++ D R + + N R+V C T L
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133
Query: 221 SHCLEPPDSRGSTV 262
S L P G TV
Sbjct: 1134 SLALSMPSRMGETV 1147
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 224 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 84
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 224 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 84
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 224 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 84
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 224 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 84
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = +2
Query: 17 AALPSTTPRQERKSSTDYSE--PRHRTELY-----PDLRS----RDARVKKKTDSIDLRD 163
AA S+ P Q++ S+ Y P+ E Y PD R RD+R+ DS L D
Sbjct: 284 AAPVSSYPSQQQPSAGYYDNYAPKTAYESYGRERGPDPRDVRDPRDSRMPDPRDSRALSD 343
Query: 164 PNGLRRRVSRFECETR 211
P R S + E+R
Sbjct: 344 PYAAESRYSEYGYESR 359
>Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 293 PA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 162
PA PN AR S W E+ + NN + + +I +R++ H+D
Sbjct: 125 PAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171
>Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 293 PA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 162
PA PN AR S W E+ + NN + + +I +R++ H+D
Sbjct: 125 PAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = -2
Query: 275 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 114
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1346
Query: 113 SEGPDITQFDV 81
EGPD Q +
Sbjct: 1347 QEGPDGQQHPI 1357
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = -2
Query: 275 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 114
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1249
Query: 113 SEGPDITQFDV 81
EGPD Q +
Sbjct: 1250 QEGPDGQQHPI 1260
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = -2
Query: 275 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 114
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1260
Query: 113 SEGPDITQFDV 81
EGPD Q +
Sbjct: 1261 QEGPDGQQHPI 1271
>AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 293 PA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 162
PA PN AR S W E+ + NN + + +I +R++ H+D
Sbjct: 125 PAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171
>AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical
protein Y48G10A.2 protein.
Length = 375
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 273 KDMLTVEPRESGGSKQCDFTSRVSHSKRETR 181
K ++ EP+E+ + D+ + ++HSK E +
Sbjct: 326 KMLIRTEPKETALRRAADYLNELTHSKTEKK 356
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 77 PRHRTELYPDLRSRDARVKKKTDSIDLRDPN-GLRRRVSRFECETRLVK-SHCLEPPDSR 250
P+ RTEL + + + +K ++ ID+ PN G V R + +VK + +E D+
Sbjct: 413 PKGRTELDAGIYTFNTGLKNESQEIDISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNG 472
Query: 251 GSTVSI 268
+ V +
Sbjct: 473 ATRVFV 478
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 77 PRHRTELYPDLRSRDARVKKKTDSIDLRDPN-GLRRRVSRFECETRLVK-SHCLEPPDSR 250
P+ RTEL + + + +K ++ ID+ PN G V R + +VK + +E D+
Sbjct: 413 PKGRTELDAGIYTFNTGLKNESQEIDISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNG 472
Query: 251 GSTVSI 268
+ V +
Sbjct: 473 ATRVFV 478
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical protein
F54F2.1 protein.
Length = 1226
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 35 TPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 166
TP++++K EPR + DLR K+ +D + P
Sbjct: 1018 TPKKKKKGGEHRGEPRSDKARFSDLREAVKLSKEAGGVVDYKGP 1061
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSR 118
S +PR ER++S YS R R+ RSR
Sbjct: 214 SRSPRAERRASPKYSPRRSRSRSRSRSRSR 243
>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
protein Y105E8A.24b protein.
Length = 1127
Score = 25.4 bits (53), Expect = 7.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 294 ASLAESGKDMLTVEPRESGGSKQCDFT---SRVSHSKRETRRRSPFGSRRSMLSVFFLTR 124
A +++ D L++ PR G K DF+ SR + + SP S S++S+ LTR
Sbjct: 111 AMRSDAESDTLSLSPRSFGSGKTSDFSAWFSRKLNGILGDGKASP-DSTSSVVSI--LTR 167
Query: 123 ASRLRRSGY 97
SGY
Sbjct: 168 TLSKATSGY 176
>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
protein Y105E8A.24a protein.
Length = 1161
Score = 25.4 bits (53), Expect = 7.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 294 ASLAESGKDMLTVEPRESGGSKQCDFT---SRVSHSKRETRRRSPFGSRRSMLSVFFLTR 124
A +++ D L++ PR G K DF+ SR + + SP S S++S+ LTR
Sbjct: 111 AMRSDAESDTLSLSPRSFGSGKTSDFSAWFSRKLNGILGDGKASP-DSTSSVVSI--LTR 167
Query: 123 ASRLRRSGY 97
SGY
Sbjct: 168 TLSKATSGY 176
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 29 STTPRQERKSSTDYSEPRHRTELYPDLRSR 118
S +PR ER++S YS R R+ RSR
Sbjct: 214 SRSPRAERRASPKYSPRRSRSRSRSRSRSR 243
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 41 RQERKSSTDYSEPRHRTELYPDLRSRD--ARVKKKTDSIDLRDPNG 172
R++ + S + H ++ ++R ++ A + +T SID RDP G
Sbjct: 586 RKDGQESAFMMDDSHFGMVFDEIRRKEIPAELDSETSSIDSRDPFG 631
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 41 RQERKSSTDYSEPRHRTELYPDLRSRD--ARVKKKTDSIDLRDPNG 172
R++ + S + H ++ ++R ++ A + +T SID RDP G
Sbjct: 586 RKDGQESAFMMDDSHFGMVFDEIRRKEIPAELDSETSSIDSRDPFG 631
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 260 LWSPESREALNNVTLLVAFRIQNARRDVEAHLD 162
L SP+ RE N ++AFRI+ R+++ L+
Sbjct: 255 LKSPKYREQWQNSIKMMAFRIKKTRQELIRELN 287
>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-like
cell adhesionmolecule family protein 1 protein.
Length = 1073
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 5 SQXDAALPSTTPRQERKSSTDYSEPRHRT 91
S+ + ++ P E K DY EP+H T
Sbjct: 973 SKLSPIILTSLPGDELKRPADYEEPKHAT 1001
>U23514-1|AAC46543.1| 817|Caenorhabditis elegans Hypothetical
protein F48E8.6 protein.
Length = 817
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 45 RNGSRLQTIPSPDIELSYIRTFGAVMHVLRKK 140
RN + + S ++ S + T GA++H+L KK
Sbjct: 144 RNEIQDNGVTSDEVPDSCLITIGAIVHILEKK 175
>U22832-2|AAA64509.2| 571|Caenorhabditis elegans Hypothetical
protein C09F5.1 protein.
Length = 571
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 45 RNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIASISAIQMGFD 179
R+ S + T+P+P +SY + F + L +K S A+Q +D
Sbjct: 179 RSSSNIFTVPAPAAHVSYRQEFASDNESLARKD--SYRAMQSSWD 221
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 104 DLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRL 214
D+R RD ++KKK + I+ +G R + + E R+
Sbjct: 450 DIRVRDEKLKKKDEEIEKLQKDGNRLKSTLQTLEKRV 486
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 104 DLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRL 214
D+R RD ++KKK + I+ +G R + + E R+
Sbjct: 450 DIRVRDEKLKKKDEEIEKLQKDGNRLKSTLQTLEKRV 486
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 41 RQERKSSTDYSEPRHRTELYPDLRSRD--ARVKKKTDSIDLRDPNG 172
R++ + S + H ++ ++R ++ A + +T SID RDP G
Sbjct: 586 RKDGQESAFMMDDSHFGMVFDEIRRKEIPAELDSETSSIDSRDPFG 631
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 41 RQERKSSTDYSEPRHRTELYPDLRSRD--ARVKKKTDSIDLRDPNG 172
R++ + S + H ++ ++R ++ A + +T SID RDP G
Sbjct: 586 RKDGQESAFMMDDSHFGMVFDEIRRKEIPAELDSETSSIDSRDPFG 631
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 249 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS-GYNSVRCRGS 73
R + ++ D +SR + +R RSP S R SR RRS Y+ R R S
Sbjct: 53 RRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNS 112
Query: 72 E*SVDDFRS 46
DD RS
Sbjct: 113 R--RDDRRS 119
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 249 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS-GYNSVRCRGS 73
R + ++ D +SR + +R RSP S R SR RRS Y+ R R S
Sbjct: 81 RRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNS 140
Query: 72 E*SVDDFRS 46
DD RS
Sbjct: 141 R--RDDRRS 147
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 249 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS-GYNSVRCRGS 73
R + ++ D +SR + +R RSP S R SR RRS Y+ R R S
Sbjct: 139 RRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNS 198
Query: 72 E*SVDDFRS 46
DD RS
Sbjct: 199 R--RDDRRS 205
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 249 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS-GYNSVRCRGS 73
R + ++ D +SR + +R RSP S R SR RRS Y+ R R S
Sbjct: 140 RRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNS 199
Query: 72 E*SVDDFRS 46
DD RS
Sbjct: 200 R--RDDRRS 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,091,983
Number of Sequences: 27780
Number of extensions: 130981
Number of successful extensions: 428
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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