Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o04
(294 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 1.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 4.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 4.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 4.2
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 4.2
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 4.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 4.2
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 20 7.3
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 19 9.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 9.6
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 1.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 2 RSQXDAALPSTTPRQERKSST 64
+ Q + TTP++ERK++T
Sbjct: 779 KEQSPNSTKETTPKKERKTAT 799
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.6 bits (41), Expect = 4.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 62 TDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 157
T SE + L+P L SRD ++ ++++L
Sbjct: 407 TSASELVESSVLFPSLDSRDELHPRELEAVNL 438
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.6 bits (41), Expect = 4.2
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +2
Query: 38 PRQERKSSTDYSEPRHRTELYPD 106
PR+ R+ T+Y E R++ + + +
Sbjct: 405 PREMRQRITEYFEHRYQGKFFDE 427
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.6 bits (41), Expect = 4.2
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +2
Query: 38 PRQERKSSTDYSEPRHRTELYPD 106
PR+ R+ T+Y E R++ + + +
Sbjct: 373 PREMRQRITEYFEHRYQGKFFDE 395
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 20.6 bits (41), Expect = 4.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 198 SKRE-TRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 70
++RE R +PF + + S L RA RSG SV+ +E
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE 545
Score = 19.8 bits (39), Expect = 7.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 1 QIAXRRCSTEHNTPPGT 51
Q + +R STE P GT
Sbjct: 536 QTSVQRASTEFGIPTGT 552
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 20.6 bits (41), Expect = 4.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 45 RNGSRLQTIPSPDIEL 92
RNG+ L+T+ P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.6 bits (41), Expect = 4.2
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = +2
Query: 38 PRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 154
P+Q+++ + + + YPDL + A K + D
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACD 1488
Score = 20.2 bits (40), Expect = 5.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 225 CDFTSRVSHSKRETRRRSP 169
CD V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 19.8 bits (39), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 157 EIDAIGFFLNTCITAPKVRI*LSSMSGLGIVCRRL 53
E+D IG+ N T + SS SG+ + RL
Sbjct: 207 EVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTSRL 241
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 19.4 bits (38), Expect = 9.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 33 QHPARNGSRLQTIPSPD 83
Q P R+ R T P PD
Sbjct: 241 QQPERHYERRATPPQPD 257
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.4 bits (38), Expect = 9.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 276 GKDMLTVEPRESGGSK 229
GKD+L + R GS+
Sbjct: 493 GKDVLATDERSFSGSR 508
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,907
Number of Sequences: 438
Number of extensions: 1462
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5994288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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