Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14o03
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0678 + 21868038-21868161,21868256-21868587 29 3.2
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 28 4.2
01_06_1037 + 33990358-33991263 28 5.6
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 27 7.4
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 7.4
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340... 27 9.8
11_01_0227 + 1767191-1767847 27 9.8
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 27 9.8
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 27 9.8
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 27 9.8
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977... 27 9.8
>12_02_0678 + 21868038-21868161,21868256-21868587
Length = 151
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 452 NPNTGVWLLAETETGFALLCSCLRPGLVT 538
+P G L AE E G +L SC P LVT
Sbjct: 59 DPKAGPALAAEAENGSMMLWSCAPPKLVT 87
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 293 RCVWSTASKFCDIRVYCL 240
RC WSTAS+ CD+ V L
Sbjct: 337 RCSWSTASRGCDVVVSAL 354
>01_06_1037 + 33990358-33991263
Length = 301
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 456 PTRVCGCWPKLKLVSLFCAVAYGP 527
P R+ G WP L + FC A GP
Sbjct: 117 PGRIVGGWPALAKMLFFCCGAAGP 140
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 193 QHGRAAH*TAVRNNNRRQYTRMSQNFDAVLHTQRLQSVPRRISQLPVV*RRYNSQDA 363
Q RA H TA + ++Q R H Q+LQ V +++ V + +QD+
Sbjct: 453 QATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDS 509
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +3
Query: 354 SRCVAMTAKNRRSLFEREKPTAWLWIENAPDRVTPTRVCGCWPKLKLVSLFCAVAYG 524
+RC AM K R++ E+ + N D++ GC K +++S+ G
Sbjct: 635 TRCTAMVPKRSRTVVAAEEAQLMIGRRNEKDKLIKMLDSGCDAKHRVISVISVWGMG 691
>12_02_1094 +
26032135-26032164,26032975-26033152,26033234-26034017,
26034135-26034216,26034968-26035177
Length = 427
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = -3
Query: 522 RKQLHKRAKPVSVSANN-HTPVLGLHDRARSRSKAKQ*ASPARISFSCSWPSSPR-ILTI 349
+K+L ++ +VS + T + + + +SRS A+ +S CS P+SPR +
Sbjct: 184 QKRLRVSSEAAAVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGAASA 243
Query: 348 VSSSNNWQLANPSRHRLQSLCVEHG 274
S+S+ +L +R + +L ++ G
Sbjct: 244 SSASSERELQIRTRREIAALGLQLG 268
>11_01_0227 + 1767191-1767847
Length = 218
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 452 YTIGRVLDPKPSSRLLPLE*ASPVLGRHRHAS 357
Y GRV+ P+PSS +P +PV+GR R A+
Sbjct: 101 YWAGRVIRPRPSS--MP----TPVIGRRRRAA 126
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 399 RISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQSLCVEHG 274
+I+FS ++P P L I +N +L +PS L C EHG
Sbjct: 422 KINFS-AFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHG 462
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 456 PTRVCGCWPKLK 491
P+R C CWPK K
Sbjct: 690 PSRTCNCWPKWK 701
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -2
Query: 283 GARRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITHLFMVHIYQVYIRVHYC 119
GA+++ I D + G+R E + V R+ + I++ Y R+H C
Sbjct: 301 GAQQKLIECEQVILNDPFLGKRIEEGNFVTVPLRDEFLENARLFIFETYCRIHRC 355
>03_06_0505 -
34397054-34397087,34397127-34397474,34397650-34397757,
34397847-34398161,34399027-34399442,34399531-34400946
Length = 878
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -3
Query: 162 SWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPS 52
SWC + + I ++ R+ +++ KC+ + + PS
Sbjct: 128 SWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPS 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,993,285
Number of Sequences: 37544
Number of extensions: 307468
Number of successful extensions: 878
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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