Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n20
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   5.9  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   7.8  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   7.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   7.8  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 511 NSARDRYTVPWGFNGFINYI 570
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 313 FHIILFLLDYVFYFPF 266
           FH++LF+L YV  +PF
Sbjct: 21  FHLVLFVLSYVLGWPF 36


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 686 YLRVTSSATSEDINLDYFSNKAK 618
           Y+RV S+    +INL YF + AK
Sbjct: 505 YVRVRSNMAVSNINLGYFEDAAK 527


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 510 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 427
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 6   SITPKIITFSNMKPKLKYNFYLHVFLLXNLY 98
           S  P+I+ F   +P LKYN Y  +    N Y
Sbjct: 201 STCPRILEFMPYEPLLKYNSYRLLSTYENSY 231


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 54  KYNFYLHVFLLXNLYHSNI 110
           ++N  +HVFL+ ++YHS+I
Sbjct: 434 EWNKPVHVFLMRHVYHSSI 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,317
Number of Sequences: 5004
Number of extensions: 45334
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)