Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n19
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   1.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.5  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   5.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   7.9  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   7.9  

>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -1

Query: 566 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 441
           DL +ANR L       ANE +  +RD    R+D  + +R+  QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/101 (22%), Positives = 48/101 (47%)
 Frame = +1

Query: 280 TSLEPNRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV 459
           +SL  +    +PS         +S  PTS ++    S  ++  + +  + S+  L S ++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235

Query: 460 SRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATV 582
           S    + S  + S+S  +T  SL++  S   AS+ S+ +++
Sbjct: 236 S----TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI 272


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -1

Query: 344 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 186
           ++ R + RS+GR ++      +   +  +PN+ N L+ V+  IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 553  ASAKSALATVNFCVXSSILAINIICIHFNGR 645
            AS  SAL T   C  +SI AIN + I  +GR
Sbjct: 3563 ASVNSALLTSWICFLNSIGAINCVGIVVSGR 3593


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 337 CARKNDRWAAA*NDW 293
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
 Frame = -1

Query: 335 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS-----MNVLNKVKEAIPRNKFKAKHNR---- 183
           +P  ++L  + ++      + S++ +P S     +N  + ++E +P  K   K N     
Sbjct: 166 KPFVQALKLTFEKTLGQPAVTSTEKIPVSETTRNVNSQHLMRERVPGEKILPKSNERNIL 225

Query: 182 ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSLRN 84
           IT    Y      L N++GST++    AR +  RN
Sbjct: 226 ITSALPYVNNVPHLGNIVGSTLSADVFARYHRARN 260


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 536 LFANEMIVARRDAETARQDCE 474
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,758
Number of Sequences: 5004
Number of extensions: 48127
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)