Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n17
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   2.4  
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181...    28   3.2  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    27   5.6  
05_04_0241 - 19332540-19332635,19332931-19333023,19333743-193337...    27   7.3  

>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -1

Query: 189 NNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVHA 25
           + +  I N++ +C L  T L L Y F   TCL I    L+ L  K N ++  +HA
Sbjct: 206 STDSDINNLISSCPLLST-LCLKY-FEGITCLSIQAPALQDLEVKGNFQDFHLHA 258


>09_06_0230 + 21717225-21717301,21717888-21717972,21718045-21718165,
            21718244-21718368,21718940-21718984,21719082-21719345,
            21720067-21720111,21720182-21720212,21721644-21721693,
            21722433-21724310,21724406-21724564,21724821-21724939,
            21726917-21727059,21727670-21727735,21728184-21728317,
            21728454-21728591,21728927-21729186,21729295-21729406,
            21730727-21730909
          Length = 1344

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 314  LFSGRPSRTKHNKNDYYRRHDP 249
            L+SG+  +TK NKN Y   H+P
Sbjct: 1156 LYSGKSQKTKQNKNIYDFLHNP 1177


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 187 IIKSSWGKFEVFGLMRLFVALGS-W-RL**SFLLCFVRDGRPEKSRAILT 330
           ++ SSWG F V  + R F+ +   W +     + C ++D    +SR ++T
Sbjct: 279 LVSSSWGSFTVMRIYRCFIVIDDMWDKKSWGLIRCALQDSN-HRSRVVVT 327


>05_04_0241 -
           19332540-19332635,19332931-19333023,19333743-19333790,
           19333907-19333999
          Length = 109

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 183 NMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNI 46
           +M I+  ++ CDL  T LKL  L     C +   DN     R T +
Sbjct: 65  HMEIIGGLD-CDLRRTKLKLIALMEQTPCCETTQDNFATSNRTTGV 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,375,083
Number of Sequences: 37544
Number of extensions: 185563
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)