Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n17
         (402 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004872-1|AAO45228.1|  709|Drosophila melanogaster LD24482p pro...    29   1.8  
AE014134-1744|AAF52841.1|  709|Drosophila melanogaster CG5838-PA...    29   1.8  
AB010823-1|BAA24827.1|  709|Drosophila melanogaster DREF protein.      29   1.8  
AB019510-1|BAA34362.1|  709|Drosophila melanogaster DREF transcr...    29   3.1  
BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p pro...    28   5.4  
AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-P...    28   5.4  

>BT004872-1|AAO45228.1|  709|Drosophila melanogaster LD24482p
           protein.
          Length = 709

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = -1

Query: 210 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 31
           LT   L N  ++I+N  E  DL HT+L+   +     C    +D  K LRR   I+EVA 
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402

Query: 30  HAKQ 19
             +Q
Sbjct: 403 LLEQ 406


>AE014134-1744|AAF52841.1|  709|Drosophila melanogaster CG5838-PA
           protein.
          Length = 709

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = -1

Query: 210 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 31
           LT   L N  ++I+N  E  DL HT+L+   +     C    +D  K LRR   I+EVA 
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402

Query: 30  HAKQ 19
             +Q
Sbjct: 403 LLEQ 406


>AB010823-1|BAA24827.1|  709|Drosophila melanogaster DREF protein.
          Length = 709

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = -1

Query: 210 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 31
           LT   L N  ++I+N  E  DL HT+L+   +     C    +D  K LRR   I+EVA 
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402

Query: 30  HAKQ 19
             +Q
Sbjct: 403 LLEQ 406


>AB019510-1|BAA34362.1|  709|Drosophila melanogaster DREF
           transcription factor protein.
          Length = 709

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -1

Query: 210 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVA 34
           LT   L N  ++I+N  E  DL HT+L+   +     C    +D  K LRR   I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVA 401


>BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p
           protein.
          Length = 1312

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 335 CSVK-IARLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQ 201
           C+V   + +FS R SR +H+ N   + H P    R+I+P+     Q
Sbjct: 506 CTVDGCSMMFSSRRSRNRHSANPNPKLHSPH-LRRKISPHDGRSAQ 550


>AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-PA
           protein.
          Length = 1311

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 335 CSVK-IARLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQ 201
           C+V   + +FS R SR +H+ N   + H P    R+I+P+     Q
Sbjct: 505 CTVDGCSMMFSSRRSRNRHSANPNPKLHSPH-LRRKISPHDGRSAQ 549


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,983
Number of Sequences: 53049
Number of extensions: 317470
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)