Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n17
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   0.56 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   0.56 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   3.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 317 RLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQLLFII 186
           ++ S   ++T HN N+Y   +     N   N N +N  +L + I
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 317 RLFSGRPSRTKHNKNDY-YRRHDPRATNRRINPNTSN 210
           ++ S   ++T HN N+Y Y  ++    N   N N +N
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNN 349


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 347 RRRACSVKIARLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQL 198
           RR     K +++ S   ++T HN N+Y      +  N+++  N  N+ Q+
Sbjct: 303 RRERERSKESKIISSLSNKTIHNNNNY------KNYNKKLYYNIINIEQI 346


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 317 RLFSGRPSRTKHNKNDY 267
           ++ S   +RT HN N+Y
Sbjct: 80  KIISSLSNRTIHNNNNY 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 373 WSSASRYPRGDAPAV 329
           WS+A  +P  D P V
Sbjct: 64  WSTADGHPVNDVPGV 78


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 373 WSSASRYPRGDAPAV 329
           WS+A  +P  D P V
Sbjct: 64  WSTADGHPVNDVPGV 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,018
Number of Sequences: 438
Number of extensions: 2056
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)