Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n16
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   1.1  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   5.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.8  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 656  NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 486
            + L +K  N   ++  V + + K + +K  V+ N   IL NS   W   IK+P   S P 
Sbjct: 902  SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960

Query: 485  MWDLVKNTPELADFV 441
              D   N  +L   +
Sbjct: 961  SMDFTSNDEQLVQLL 975


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 107 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 12
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 611  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 519
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 600 LHDRHYVEDIVNVLFF 647
           L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +1

Query: 103 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 282
           YSV++ +T   S+TVLN +  +   S +N+S+ +  S        ++ + + NS   ++ 
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650

Query: 283 ISQLSFNSAKFALVSTAV 336
            S L  NS+     STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 584 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 453
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -3

Query: 320 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 147
           NA +  +K+S      +   F    ++   FNNN+  L   +     + D + ++++K  
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582

Query: 146 TVALKLPVAPSTTEYVPTSISGSK 75
                L  +P+   YV   +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,798
Number of Sequences: 5004
Number of extensions: 59395
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)