Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14n16
(697 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA... 32 0.86
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P... 31 2.0
AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P... 31 2.0
BT024254-1|ABC86316.1| 199|Drosophila melanogaster IP15861p pro... 29 4.6
BT025830-1|ABF85730.1| 258|Drosophila melanogaster IP09124p pro... 29 6.0
BT022415-1|AAY54831.1| 189|Drosophila melanogaster IP08052p pro... 29 8.0
AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein ... 29 8.0
AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein ... 29 8.0
AE014297-718|AAF54205.4| 227|Drosophila melanogaster CG18228-PA... 29 8.0
>AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA
protein.
Length = 922
Score = 31.9 bits (69), Expect = 0.86
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -3
Query: 356 PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 183
P S+KR+ +T N + E K LYS + +++ET N +PL Y L
Sbjct: 827 PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886
Query: 182 RDFITKNMAK 153
+ + ++ K
Sbjct: 887 KAYKALDVTK 896
>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
protein.
Length = 1161
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 143 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 3
+A K PVA STT VPT+++ SK S + ++ T +P
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTMATSTTATSP 386
>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
isoform A protein.
Length = 1853
Score = 30.7 bits (66), Expect = 2.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -3
Query: 209 SSIYDEVLTRDFITKNMAKFKTVALKLPV-APSTTEYVPTSISGSKKRKNSVPAKQRSSI 33
+SI D T+D T + LK AP+TT+ +PT+ + K SS
Sbjct: 1553 TSISDSTTTKDITTTAASPTTAEDLKTTTPAPTTTDNIPTTTNAPTTTKEITTTTSASST 1612
Query: 32 KNRRNTTA 9
TTA
Sbjct: 1613 DETTTTTA 1620
>BT024254-1|ABC86316.1| 199|Drosophila melanogaster IP15861p
protein.
Length = 199
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = -3
Query: 683 NMDQXIXIVNFLEKKNINYILNVMPVM--QDERKMSKRKKK 567
N ++ I ++++ K N+N ++ P M +D++K++K+KKK
Sbjct: 159 NNNEKIMQLSYITKSNVNSVIK-FPAMSVKDKKKLNKKKKK 198
>BT025830-1|ABF85730.1| 258|Drosophila melanogaster IP09124p
protein.
Length = 258
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -3
Query: 683 NMDQXIXIVNFLEKKNINYILNVMPVM--QDERKMSKRKKK 567
N ++ I ++++ K N+N ++ P M +D++K+ K+KKK
Sbjct: 219 NNNEKIMQLSYITKSNVNSVIK-FPAMSVKDKKKLKKKKKK 258
>BT022415-1|AAY54831.1| 189|Drosophila melanogaster IP08052p
protein.
Length = 189
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -3
Query: 662 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK-QPEWPSSPA 486
I+N +K+ +N++ +D+ + K + ++NN+ L SWYT ++ P+ P +
Sbjct: 127 ILNLWQKEAVNFV-----GQRDDVIVVKGARAQLHNNEMKLNASWYTNMQINPDIPDATG 181
Query: 485 MWDLVKN 465
M + N
Sbjct: 182 MLEWYNN 188
>AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein
protein.
Length = 377
Score = 28.7 bits (61), Expect = 8.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 275 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 105
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252
>AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein
protein.
Length = 373
Score = 28.7 bits (61), Expect = 8.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 275 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 105
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252
>AE014297-718|AAF54205.4| 227|Drosophila melanogaster CG18228-PA
protein.
Length = 227
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -3
Query: 662 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK-QPEWPSSPA 486
I+N +K+ +N++ +D+ + K + ++NN+ L SWYT ++ P+ P +
Sbjct: 165 ILNLWQKEAVNFV-----GQRDDVIVVKGARAQLHNNEMKLNASWYTNMQINPDIPDATG 219
Query: 485 MWDLVKN 465
M + N
Sbjct: 220 MLEWYNN 226
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,447,119
Number of Sequences: 53049
Number of extensions: 634383
Number of successful extensions: 2041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2029
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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