Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14n16
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 32 0.45
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 31 0.79
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 31 1.0
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 31 1.0
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 31 1.0
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 4.2
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 5.5
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 28 5.5
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 28 5.5
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 27 9.7
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 27 9.7
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3
Query: 278 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 108
D+ +E Y+ LN F +NV L+S I + + D I +++ K ++LP +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319
Query: 107 EYVPTSISGSKK 72
E P ++ G +
Sbjct: 320 EQPPRTVLGCSR 331
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 31.1 bits (67), Expect = 0.79
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -3
Query: 311 LAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVA-- 138
LA +K+ + D+L + LN ++ AP + +++ + ++ ++ + A A
Sbjct: 33 LALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYMPASTAPTSASATA 92
Query: 137 --LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 3
LK AP+ PT+ G +K +S A + S R+ + P
Sbjct: 93 PDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISPPP 139
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 320 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 192
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 320 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 192
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 320 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 192
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 492 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 617
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 411 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 572
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 573 LAFGHFAFVLHD 608
G FA VL +
Sbjct: 246 TNSGPFASVLRE 257
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 623 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 462
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 46 CLAGTEFFLFLLPLIEVGTYSVV 114
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 242 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 400
RL C + Y+A LL LP+ + Q+ S +L RC T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -2
Query: 390 DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 232
++ F+R NS E++ TD + R LRNA + L +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -3
Query: 662 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 483
I F++ +N+ + N V++ E + + ++ NN Y + + +P + + P +
Sbjct: 67 IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123
Query: 482 WDLVKN 465
WD + N
Sbjct: 124 WDTINN 129
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 143 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 3
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 537
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 143 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 3
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,728
Number of Sequences: 27780
Number of extensions: 341196
Number of successful extensions: 1069
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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