Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14n15
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 337 9e-94
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 337 9e-94
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 337 9e-94
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 68 1e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.26
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 337 bits (828), Expect = 9e-94
Identities = 147/204 (72%), Positives = 176/204 (86%)
Frame = -1
Query: 663 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCG 484
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCG
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCG 90
Query: 483 KKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 304
K A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLP
Sbjct: 91 KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150
Query: 303 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPH 124
SGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPH
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPH 210
Query: 123 GGGNHQHIGKASTVKRGTSAGRKV 52
GGGNHQH+G ++TV R ++ G+KV
Sbjct: 211 GGGNHQHVGHSTTVPRQSAPGQKV 234
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 337 bits (828), Expect = 9e-94
Identities = 147/204 (72%), Positives = 176/204 (86%)
Frame = -1
Query: 663 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCG 484
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCG
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCG 90
Query: 483 KKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 304
K A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLP
Sbjct: 91 KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150
Query: 303 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPH 124
SGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPH
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPH 210
Query: 123 GGGNHQHIGKASTVKRGTSAGRKV 52
GGGNHQH+G ++TV R ++ G+KV
Sbjct: 211 GGGNHQHVGHSTTVPRQSAPGQKV 234
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 337 bits (828), Expect = 9e-94
Identities = 147/204 (72%), Positives = 176/204 (86%)
Frame = -1
Query: 663 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCG 484
LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCG
Sbjct: 31 LDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCG 90
Query: 483 KKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 304
K A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLP
Sbjct: 91 KNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLP 150
Query: 303 SGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPH 124
SGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPH
Sbjct: 151 SGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPH 210
Query: 123 GGGNHQHIGKASTVKRGTSAGRKV 52
GGGNHQH+G ++TV R ++ G+KV
Sbjct: 211 GGGNHQHVGHSTTVPRQSAPGQKV 234
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 67.7 bits (158), Expect = 1e-12
Identities = 41/125 (32%), Positives = 69/125 (55%)
Frame = -1
Query: 471 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 292
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 291 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 112
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 111 HQHIG 97
+ IG
Sbjct: 275 GKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 245 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 415
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 234 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 142
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.3
Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Frame = +1
Query: 7 LASTNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVT 180
L ++ G ASS+ + A SS +GSL Y T V ++ R G ++T + +
Sbjct: 432 LRRSSIDGSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSI 491
Query: 181 FDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLG--SRR*LYSCTLSI--RIVSN 348
F +S Q +SS + +S + + + G S L S T S+ + N
Sbjct: 492 FSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPN 551
Query: 349 HSGEVSRGTCQTTSITHFLFKIAHNGT--LRHSSNRHHI-SNFKSCFLSTINKLACVEPF 519
S V + + S + T + +S+ + + SN + T++ +
Sbjct: 552 ASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASGTT 611
Query: 520 GSNEELL 540
S E++
Sbjct: 612 SSTSEIV 618
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 386 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 484
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 9.9
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +1
Query: 7 LASTNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAV--T 180
+ +T+P SS T+ + S++ S S +TTT+ + G+T + V +
Sbjct: 115 IPTTSPVPTTSSTPTSSSILSNSTIPSSSSISASTITTTI-----ISGSTQFTTTFVDQS 169
Query: 181 FDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 303
D V VV P++ ++ T+ +S ++ S Q + G++
Sbjct: 170 IDTVEVVIPTA---GYITTTLTSGSSYPVSTTTLQTVSGTQ 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,822
Number of Sequences: 5004
Number of extensions: 68003
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -