Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n14
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       31   0.45 
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   3.1  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   4.2  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   5.5  
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    27   5.5  
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    27   9.6  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    27   9.6  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     27   9.6  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 179 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLPL 283
           LP  P      W PL   M  T P C +L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -3

Query: 213 HARFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 100
           + R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 15  YPRLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 221 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 361
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 336 RIARREQKLKEHGASSCISGKRGRRC 259
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -3

Query: 252 IWHWGSVDSISGSHARFQLSGN---SGRKHS 169
           ++ WGS+D+    H+RF  S N   +GR H+
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHN 440


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 438 NRVSVIPQFHSKTDSCVEESYS-KLP 364
           NR   I + H  T SC  ESYS K+P
Sbjct: 695 NRAKQIAELHMATKSCWSESYSVKVP 720


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 330 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSR 166
           A++ +   E   S    G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 87  AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 330 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 217
           A RE  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 44  ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,743
Number of Sequences: 37544
Number of extensions: 227002
Number of successful extensions: 499
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)