Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n13
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    29   0.72 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.7  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   8.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.9  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 569 GYRDALLQIFICVSSRLNIHHELVNV 646
           GYR      ++CV S  ++H+E VN+
Sbjct: 67  GYRPPSFSFYLCVKSIFHVHNESVNI 92


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 489  SFLLCFVRDGRPEKSRAILTLQARLRVDIVTRYSKFLYAYL 611
            S LL ++R  R  +     T Q RLR  IV RYS   ++ L
Sbjct: 1843 SVLLFWLRPSRQIRPPIFSTKQNRLRKRIVRRYSALYFSIL 1883


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 211  FNCKHSVVFLFSMTATSFMLVFRRNSFKLSKAISR 315
            F+C H + FL      +F L+F R++ KLSK  SR
Sbjct: 3085 FSCLHFIRFL-----NTFCLIFGRDANKLSKEKSR 3114


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 275 KTNIKEVAVMLNKKTTECLQLKQKIDKKIAQRILIKIYTIK**NHNEFN 129
           K N    A    KKT E LQ  Q++ K+IA++ + ++Y I     N++N
Sbjct: 604 KANATASAPNKKKKTVETLQ--QQVIKEIARKEIPRVYKII--QQNQYN 648


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 545 NTAGASPRGYRDALLQIFICVSSRLNIHHELVNVSAVHTKNPPCRLMHASGSASMH 712
           NT  AS   Y       FI +S  LN+ +   + S   +  PP +++      S H
Sbjct: 184 NTREASNNTYLYGFSNNFINISRTLNLRYPSASASISDSLPPPYQVLSVPSVTSTH 239


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 578 DALLQIFICVSSRLNIHH 631
           DA L++F  VSSRL  HH
Sbjct: 740 DARLRLFHTVSSRLRTHH 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,282
Number of Sequences: 5004
Number of extensions: 65714
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)