Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14n13
(761 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB019510-1|BAA34362.1| 709|Drosophila melanogaster DREF transcr... 32 0.74
BT004872-1|AAO45228.1| 709|Drosophila melanogaster LD24482p pro... 32 0.98
AE014134-1744|AAF52841.1| 709|Drosophila melanogaster CG5838-PA... 32 0.98
AB010823-1|BAA24827.1| 709|Drosophila melanogaster DREF protein. 32 0.98
AJ243710-1|CAB57345.3| 1299|Drosophila melanogaster prickle sple... 29 6.9
AJ243709-1|CAB99211.2| 1029|Drosophila melanogaster prickle pkM ... 29 6.9
AJ243708-1|CAB57344.3| 963|Drosophila melanogaster prickle pk i... 29 6.9
AE013599-318|AAF59281.2| 1299|Drosophila melanogaster CG11084-PC... 29 6.9
AE013599-313|AAF59284.2| 1029|Drosophila melanogaster CG11084-PB... 29 6.9
AE013599-308|AAM68908.1| 963|Drosophila melanogaster CG11084-PA... 29 6.9
>AB019510-1|BAA34362.1| 709|Drosophila melanogaster DREF
transcription factor protein.
Length = 709
Score = 32.3 bits (70), Expect = 0.74
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = -1
Query: 428 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 249
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 248 MLNKKTTECLQLKQKIDKKIAQ 183
+L++ + +I K+++
Sbjct: 403 LLDQVKDLMQRHSTEIASKVSE 424
>BT004872-1|AAO45228.1| 709|Drosophila melanogaster LD24482p
protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.98
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 428 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 249
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 248 MLNKKTTECLQLKQKIDKKIAQ 183
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>AE014134-1744|AAF52841.1| 709|Drosophila melanogaster CG5838-PA
protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.98
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 428 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 249
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 248 MLNKKTTECLQLKQKIDKKIAQ 183
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>AB010823-1|BAA24827.1| 709|Drosophila melanogaster DREF protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.98
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 428 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 249
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 248 MLNKKTTECLQLKQKIDKKIAQ 183
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>AJ243710-1|CAB57345.3| 1299|Drosophila melanogaster prickle sple
isoform protein.
Length = 1299
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 626 HHELVNVSAVHTKNPPCRLMHASG---SASMHRPTPGKKHDDRE 748
HH+L A+ T +PP L H +G SAS H P G H D +
Sbjct: 477 HHQLS--PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQ 518
>AJ243709-1|CAB99211.2| 1029|Drosophila melanogaster prickle pkM
isoform protein.
Length = 1029
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 626 HHELVNVSAVHTKNPPCRLMHASG---SASMHRPTPGKKHDDRE 748
HH+L A+ T +PP L H +G SAS H P G H D +
Sbjct: 207 HHQLS--PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQ 248
>AJ243708-1|CAB57344.3| 963|Drosophila melanogaster prickle pk
isoform protein.
Length = 963
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 626 HHELVNVSAVHTKNPPCRLMHASG---SASMHRPTPGKKHDDRE 748
HH+L A+ T +PP L H +G SAS H P G H D +
Sbjct: 141 HHQLS--PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQ 182
>AE013599-318|AAF59281.2| 1299|Drosophila melanogaster CG11084-PC,
isoform C protein.
Length = 1299
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 626 HHELVNVSAVHTKNPPCRLMHASG---SASMHRPTPGKKHDDRE 748
HH+L A+ T +PP L H +G SAS H P G H D +
Sbjct: 477 HHQLS--PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQ 518
>AE013599-313|AAF59284.2| 1029|Drosophila melanogaster CG11084-PB,
isoform B protein.
Length = 1029
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 626 HHELVNVSAVHTKNPPCRLMHASG---SASMHRPTPGKKHDDRE 748
HH+L A+ T +PP L H +G SAS H P G H D +
Sbjct: 207 HHQLS--PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQ 248
>AE013599-308|AAM68908.1| 963|Drosophila melanogaster CG11084-PA,
isoform A protein.
Length = 963
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 626 HHELVNVSAVHTKNPPCRLMHASG---SASMHRPTPGKKHDDRE 748
HH+L A+ T +PP L H +G SAS H P G H D +
Sbjct: 141 HHQLS--PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQ 182
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,411,134
Number of Sequences: 53049
Number of extensions: 674346
Number of successful extensions: 1642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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