Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n10
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   1.0  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   1.0  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    24   2.4  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    23   4.2  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    23   5.5  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    22   9.7  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 169 IDQNMLXEKAT-TASFIQTVDNFTRPVL 89
           ++++ L +K   T +FIQ++DNF   +L
Sbjct: 140 VNEHFLDKKTEETVAFIQSIDNFVEKIL 167


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 135 PPVLYRLLTILPVLFYCNFLXNFTLKITHRRLSILS 28
           PP+  R+L  L  + Y + L +   K TH  L IL+
Sbjct: 114 PPIWVRVLPTLENILYGSNLSSLLSKTTHSILDILA 149



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 57  SSM*NXLKSCNKTGRVKLSTVCIKLAVVAFSXNIFWSMYXLKXNF 191
           S++   L +CN+  + KL T    +       N  WS   L+  F
Sbjct: 5   STLKKRLAACNRASQYKLETSLNPMPTFRLLRNTKWSWTHLQYVF 49


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 126 LYRLLTILPVLFYCNFLXNFTLKITHRRLSILSISLKFTPT 4
           L R+ T L VL  CN L    L +  R      +  +F P+
Sbjct: 118 LVRMFTTLAVLAQCNLLCKLALTVLGREAFKEQMVKEFDPS 158


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 17  FRLMERMLRRRCVIFNVKXIKK 82
           F+ + R LRRR    N+K I K
Sbjct: 70  FQALPRCLRRRAASHNIKRIPK 91


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 154 LXEKATTASFIQTVDNFTRPVLLQLFN 74
           + E+  T SF++ + NF R  L + FN
Sbjct: 361 MGERVETVSFVKDISNF-RKTLKKTFN 386


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 135 PPVLYRLLTILPVLF 91
           P  L+ LL+I+P+LF
Sbjct: 317 PNFLFALLSIIPILF 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,271
Number of Sequences: 5004
Number of extensions: 9472
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)