Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n10
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0332 - 3635909-3635912,3635947-3636003,3636004-3636053,363...    25   6.4  
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821...    25   8.4  

>10_01_0332 -
           3635909-3635912,3635947-3636003,3636004-3636053,
           3637887-3637945,3638054-3638114,3638938-3640479
          Length = 590

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 94  VLLQLFNXFHIEDYTSASQHSFHQSKIYTNS 2
           V++ +   F  +  T  +Q  FHQ+ +YT S
Sbjct: 517 VIVAIIRLFEKDQLTLRNQFGFHQNHVYTVS 547


>11_06_0528 -
           24681630-24681751,24681911-24682025,24682134-24682193,
           24682454-24682513,24682606-24682668,24682752-24682798,
           24682884-24683049,24683136-24683228,24683306-24683370,
           24683462-24683537,24683644-24683709,24684114-24684203,
           24684359-24684421,24684548-24684670
          Length = 402

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 166 DQNMLXEKATTASFIQTVDNFTRPVLLQLFNXFHI 62
           D ++  E A    FI+T++N  +  +  LFN  +I
Sbjct: 181 DADVSIEAAEIKEFIETIENLPKAGVQDLFNRAYI 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,481,136
Number of Sequences: 37544
Number of extensions: 57115
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)