Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n10
         (202 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-4|CAA84678.1|  442|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    25   9.8  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    25   9.8  

>Z35604-4|CAA84678.1|  442|Caenorhabditis elegans Hypothetical
           protein ZK1058.4 protein.
          Length = 442

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 160 NMLXEKATTASFIQTVDNFTRPVLLQLF 77
           N L  K T AS  QT+ +  RP L + F
Sbjct: 120 NYLIGKTTNASIAQTIFDMCRPTLEEQF 147


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
           protein Y18D10A.13 protein.
          Length = 2417

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  NXLKSCNKTGRVKLSTVCIKLAVVA 143
           N L SC+++  ++L TVC KL  ++
Sbjct: 565 NLLSSCDQSDLLQLYTVCQKLLEIS 589


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 2417

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  NXLKSCNKTGRVKLSTVCIKLAVVA 143
           N L SC+++  ++L TVC KL  ++
Sbjct: 565 NLLSSCDQSDLLQLYTVCQKLLEIS 589


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,947,102
Number of Sequences: 27780
Number of extensions: 55208
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)