Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n10
         (202 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   4.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   4.3  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            19   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   7.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   7.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              18   9.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 122 YKTGGGCFFXQHILVDVXVKI 184
           YK GGG F   + L  V   I
Sbjct: 12  YKNGGGAFLIPYFLTLVLAGI 32


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 141 QPPPVLYRLLTILPVLF 91
           +P P L+ LL +L +LF
Sbjct: 42  EPNPSLHYLLALLYILF 58


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 122 YKTGGGCFFXQHIL 163
           YK GGG F   + +
Sbjct: 50  YKNGGGAFMVPYFI 63


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 122 YKTGGGCFFXQHIL 163
           YK GGG F   + +
Sbjct: 103 YKNGGGAFMVPYFI 116


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 69  NXLKSCNKTGRVK 107
           N  + CN+ GRVK
Sbjct: 246 NCERLCNRLGRVK 258


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 153 NIFWSMYXL 179
           +I+WSMY L
Sbjct: 37  SIYWSMYHL 45


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 70  FHIEDYTSASQHSF 29
           FH++ YT+ S+  F
Sbjct: 206 FHMDGYTNNSKWDF 219


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 130 SFIQTVDNFTRPVLLQLFN 74
           S++  +++F  PV+  +FN
Sbjct: 663 SWLGYMNSFVNPVIYTVFN 681


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +1

Query: 136 WLLFXATYFG 165
           WL F   YFG
Sbjct: 719 WLAFVPIYFG 728


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +1

Query: 136 WLLFXATYFG 165
           WL F   YFG
Sbjct: 861 WLAFVPLYFG 870


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +1

Query: 136 WLLFXATYFG 165
           WL F   YFG
Sbjct: 809 WLAFVPIYFG 818


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 108 ILPVLFYCNFLXNFTLKITHRRLSILS 28
           ++PV F      N T+    RR  ILS
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILS 185


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 108 ILPVLFYCNFLXNFTLKITHRRLSILS 28
           ++PV F      N T+    RR  ILS
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILS 185


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 108 ILPVLFYCNFLXNFTLKITHRRLSILS 28
           ++PV F      N T+    RR  ILS
Sbjct: 210 LIPVHFALRIYRNGTVNYLMRRHLILS 236


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 108 ILPVLFYCNFLXNFTLKITHRRLSILS 28
           ++PV F      N T+    RR  ILS
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILS 185


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 129 VLYRLLTILPVLFYC 85
           +LY  LTI+ +L  C
Sbjct: 1   MLYNNLTIVIILIMC 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,540
Number of Sequences: 438
Number of extensions: 770
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)