Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14n09
(345 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00274-1|CAA68377.1| 758|Drosophila melanogaster finger protein... 35 0.025
U17742-1|AAB60232.1| 758|Drosophila melanogaster zinc finger DN... 35 0.025
BT024234-1|ABC86296.1| 758|Drosophila melanogaster LD14196p pro... 35 0.025
AE014297-790|AAF54270.1| 758|Drosophila melanogaster CG9786-PB,... 35 0.025
AE014297-789|AAN13395.1| 758|Drosophila melanogaster CG9786-PA,... 35 0.025
AE014134-557|AAF51147.1| 993|Drosophila melanogaster CG9660-PB,... 32 0.23
AY122093-1|AAM52605.1| 607|Drosophila melanogaster GH04589p pro... 29 1.2
AY075522-1|AAL68330.1| 148|Drosophila melanogaster RE70209p pro... 29 1.2
AE014298-2932|AAN09518.1| 148|Drosophila melanogaster CG33932-P... 29 1.2
AE014134-3148|AAF53836.1| 578|Drosophila melanogaster CG10366-P... 29 1.2
AE013599-113|AAF57305.2| 399|Drosophila melanogaster CG12754-PA... 29 1.2
BT022831-1|AAY55247.1| 665|Drosophila melanogaster IP13359p pro... 27 8.7
AE013599-2587|AAM68477.1| 750|Drosophila melanogaster CG30325-P... 27 8.7
>Y00274-1|CAA68377.1| 758|Drosophila melanogaster finger protein
protein.
Length = 758
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 17
++ CPKC FVT + + +I HKN D+C + +N N+H
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC--SYTCVNKSMLNSH 315
>U17742-1|AAB60232.1| 758|Drosophila melanogaster zinc finger
DNA-binding protein protein.
Length = 758
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 17
++ CPKC FVT + + +I HKN D+C + +N N+H
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC--SYTCVNKSMLNSH 315
>BT024234-1|ABC86296.1| 758|Drosophila melanogaster LD14196p
protein.
Length = 758
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 17
++ CPKC FVT + + +I HKN D+C + +N N+H
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC--SYTCVNKSMLNSH 315
>AE014297-790|AAF54270.1| 758|Drosophila melanogaster CG9786-PB,
isoform B protein.
Length = 758
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 17
++ CPKC FVT + + +I HKN D+C + +N N+H
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC--SYTCVNKSMLNSH 315
>AE014297-789|AAN13395.1| 758|Drosophila melanogaster CG9786-PA,
isoform A protein.
Length = 758
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 17
++ CPKC FVT + + +I HKN D+C + +N N+H
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC--SYTCVNKSMLNSH 315
>AE014134-557|AAF51147.1| 993|Drosophila melanogaster CG9660-PB,
isoform B protein.
Length = 993
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -2
Query: 335 KTFEANKVGQHTTYDVVGKRDYNKFDKLVKKY*HVAINHTTFQEYKQSQQKAFRSLCS 162
++ A+K +TY + D+ +F +++K + +V + FQ+Y SQ + + S
Sbjct: 15 QSLNAHKDASTSTYPLPSVADWKEFQQMLKNHKNVQVKRYGFQDYHHSQDFKYGKIYS 72
>AY122093-1|AAM52605.1| 607|Drosophila melanogaster GH04589p
protein.
Length = 607
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 211 FKSTNNLS--KKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVIN 38
FKS N L K+ D + +CP+C +S ++ + +H + D C +F
Sbjct: 401 FKSANRLKHHKETHDPHKYICPECGMQLNSRTTLNRHRLVHTDQMQHKCDYCGREF--KR 458
Query: 37 SKSWNNH 17
+K+ NH
Sbjct: 459 AKALKNH 465
>AY075522-1|AAL68330.1| 148|Drosophila melanogaster RE70209p
protein.
Length = 148
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 77 FCVKIFMHFYVFSHAHFGRRHKITLWT*HYIMIGRLFAEIVCTLETSYD*SQHVNIFSPI 256
FCV + + Y+ S+ H+ +W+ +++++ +F ++C +S ++ +FSPI
Sbjct: 72 FCVIVGIRMYLDSNNKRKALHRF-MWSTYFLVLIAIFKYLLCLKLSSKTGLEYSEVFSPI 130
>AE014298-2932|AAN09518.1| 148|Drosophila melanogaster CG33932-PA,
isoform A protein.
Length = 148
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 77 FCVKIFMHFYVFSHAHFGRRHKITLWT*HYIMIGRLFAEIVCTLETSYD*SQHVNIFSPI 256
FCV + + Y+ S+ H+ +W+ +++++ +F ++C +S ++ +FSPI
Sbjct: 72 FCVIVGIRMYLDSNNKRKALHRF-MWSTYFLVLIAIFKYLLCLKLSSKTGLEYSEVFSPI 130
>AE014134-3148|AAF53836.1| 578|Drosophila melanogaster CG10366-PA
protein.
Length = 578
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 211 FKSTNNLS--KKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVIN 38
FKS N L K+ D + +CP+C +S ++ + +H + D C +F
Sbjct: 372 FKSANRLKHHKETHDPHKYICPECGMQLNSRTTLNRHRLVHTDQMQHKCDYCGREF--KR 429
Query: 37 SKSWNNH 17
+K+ NH
Sbjct: 430 AKALKNH 436
>AE013599-113|AAF57305.2| 399|Drosophila melanogaster CG12754-PA
protein.
Length = 399
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 244 NIDMLRSIIRRFKSTNNLSKKPSDHYVVLC 155
++DMLR IRR +S NLS+ S +V C
Sbjct: 218 HLDMLRERIRRLRSDENLSEAESYEELVKC 247
>BT022831-1|AAY55247.1| 665|Drosophila melanogaster IP13359p
protein.
Length = 665
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 217 RRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEY-IEMHK 92
R+ K ++ K+PS H+ C C V + Y ++M K
Sbjct: 566 RKVKKVKDVKKEPSQHFKKTCSLCKCVRRKRSELQPYMLQMQK 608
>AE013599-2587|AAM68477.1| 750|Drosophila melanogaster CG30325-PA
protein.
Length = 750
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 217 RRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEY-IEMHK 92
R+ K ++ K+PS H+ C C V + Y ++M K
Sbjct: 651 RKVKKVKDVKKEPSQHFKKTCSLCKCVRRKRSELQPYMLQMQK 693
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,769
Number of Sequences: 53049
Number of extensions: 259608
Number of successful extensions: 662
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 819378027
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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