Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n04
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   208   5e-55
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   208   5e-55
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    27   1.7  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   2.9  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   3.8  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.1  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   5.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.7  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  208 bits (507), Expect = 5e-55
 Identities = 95/127 (74%), Positives = 111/127 (87%)
 Frame = -2

Query: 438 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 259
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 258 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 79
            EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 78  RGMRHXL 58
           RG+RH L
Sbjct: 121 RGLRHAL 127



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -3

Query: 53  LRVRGQHTKTTGRRGRT 3
           LRVRGQHTKTTGRRG+T
Sbjct: 129 LRVRGQHTKTTGRRGKT 145


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  208 bits (507), Expect = 5e-55
 Identities = 95/127 (74%), Positives = 111/127 (87%)
 Frame = -2

Query: 438 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 259
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 258 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 79
            EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 78  RGMRHXL 58
           RG+RH L
Sbjct: 121 RGLRHAL 127



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -3

Query: 53  LRVRGQHTKTTGRRGRT 3
           LRVRGQHTKTTGRRG+T
Sbjct: 129 LRVRGQHTKTTGRRGKT 145


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 111 DLERLKKIRAHRGMRHXLG 55
           D+ RL  IR +RGMRH  G
Sbjct: 76  DISRLVNIRCYRGMRHVNG 94


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 336
           +++D  F+ F C F+     +  G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 108 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 209
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 375 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 283
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -2

Query: 285 LDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 106
           L+  A   TEE    II+   N  QY IP+ F+  +K+ +     +  +S  +SK   D 
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162

Query: 105 ERLKKIR 85
              ++ R
Sbjct: 163 SNRRESR 169


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 239 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 385
           I   SSS  S A   + +S+FL+ +L+ +  TP      N  + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 209 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 328
           YC  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,038
Number of Sequences: 5004
Number of extensions: 45776
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)